Files
brain-of-reese/app/api/sync.py
T
ducoterra 0f77e9a876
Build and Push Containers / build-and-push-app (push) Successful in 2m3s
Build and Push Containers / build-and-push-db (push) Failing after 14s
phase: 121_git_source_tokens
**Phase 121 final verification pass — all green** (all 4 tasks already in `complete/`; verified, no defects found, no changes needed)

- Verified implementation vs phase design: migration `0021` (reversible, round-tripped via `alembic downgrade base` + `upgrade head` → head `0021`), `GitSource.token` column, `normalize_credential`/`clone_url_for`/`sanitize_url`, clone callers switched (`sync.py`, `import_docs.py`), masked token fields in add form + editor, `extra="forbid"` output shapes
- Tests: `uv run pytest` → 2662 passed, 0 failed (exit 0); `uv run pytest --cov=app --cov-report=term-missing` → TOTAL **99%** (≥90% gate)
- Lint/types: `uv run ruff check .` → All checks passed; `uv run pyright` → 0 errors, 0 warnings
- E2E in isolation: `uv run pytest tests/e2e/test_git_source_tokens.py -v --no-cov` → **4 passed**

Completion criteria:
1. Private repo (UI add or pasted embedded-token URL) clones with injected token; token absent from every API response, page text, title attr, and full HTML — **PASS** (integration raw-JSON assertions + E2E `_assert_token_nowhere`)
2. Legacy embedded-token rows still clone from stored URL; output sanitized — **PASS** (`test_sync_legacy_row_clones_with_original_stored_url`, `test_get_masks_legacy_embedded_token_row`, env-fallback masking)
3. Public/local sources byte-identical — **PASS** (verbatim-URL + no-userinfo-unchanged tests)
4. pytest / coverage / ruff / pyright — **PASS** (see above)
5. Commit + phase move — harness responsibility; task files already in `complete/`, changes left in working tree (no commit made, per protocol)

Notable: no deviations; DB left at head, functional. Next pending phase: **122_image_documents** (then 123_chat_image_questions).
2026-09-24 20:51:39 -04:00

472 lines
23 KiB
Python

"""Sources sync API — one-click KB mirror (phase 32, task 01).
Admin-only ``POST /api/sync`` + ``GET /api/sync/status`` behind the
existing :func:`app.core.auth.require_admin` (A10 extended, phase 16
pattern — the public API surface stays stateless, the signed cookie
remains the only session state, same as ``/api/steering``).
The button's backend runs the full document sync **in-process** (A12
untouched — no queue, no new services): one ``asyncio`` background task
plus a module-level :class:`SyncStatus` that the UI polls every 2 s
(task 02). One sync at a time — ``POST`` while a run is in flight is
409; the status object is authoritative, so the UI can never sit on a
stale button state (§7.4 adaptation, phase locked decisions).
Pipeline (the canonical "mirror the sources" action — phase locked
decisions):
1. verify ``embed`` + summary model availability — fail fast before
any clone (:func:`app.rag.llm.check_models`, phase 41): a dead
model endpoint aborts the run naming the unavailable model, before
source resolution or any ``clone_or_pull``;
2. resolve the effective sources — the ``git_sources`` DB rows (git
**and** local, phase 38), else the ``BOR_GIT_SOURCES`` fallback
(git-only)
(:func:`app.rag.git_sources.effective_sources`, shared with the
CLI) — empty on both origins (no git rows, no local rows, no env
URLs) fails loudly (``no sources configured (git or local)``)
instead of silently importing the legacy local directories;
3. per resolved row: ``kind=git`` → :func:`scripts.git_sync.clone_or_pull`
with the phase-121 clone URL (:func:`app.rag.git_sources.clone_url_for`
— the row's ``token`` column injected as
``https://x-access-token:<token>@…`` only for https? rows; NULL
token → the bare stored URL verbatim, so public repos and legacy
embedded-token rows clone exactly as before) into
``BOR_SOURCES_DIR/<repo-name>/`` (phase 28 — reused, not
re-implemented; the checkout name stays on the bare URL —
credential-free); ``kind=local`` → the stored directory, re-verified
``.is_dir()`` **at sync time** (it may have moved/deleted since
add-time) — a missing directory raises ``local source missing:
<path>``; a failing clone or a missing local dir aborts before any
import;
4. ``import_sources(..., prune=True)`` over the single combined list
(git checkouts + local dirs), honoring each row's ``ignore_paths``
(phase 89 — the per-root ignore map is built in the same per-row
loop as the source list), its ``include_hidden`` flag (phase 105 —
the per-root hidden-folders map, same per-row construction), and
feeding each git checkout's per-file last-commit dates (phase 106,
D2 — the per-root date map, ``file_commit_dates`` after the clone,
same per-row construction; local rows contribute nothing and take
the importer's mtime fallback) — prune so files deleted upstream,
out of
a local dir, or newly matching an ignore pattern leave the index
(pruning covers the union; the CLI's no-prune default is unchanged);
5. when the import changed the KB (added + updated > 0),
``regenerate_overview`` refreshes the single ``kb_overview`` row
(phase 31 trigger, best-effort inside) — and ``generate_
folder_summaries`` (phase 94, task 02) regenerates the stored folder
summaries (the drill-down ``ls``'s per-level descriptions): its gate
is the same change trigger (full regeneration) **plus**, on an
unchanged re-sync, a GAP probe — a candidate folder (at least 2
docs) with no stored row (``missing_folder_summaries``, phase 96,
task 03): a gap fills ONLY the missing rows (``only_missing=True``;
the old table-empty first-sync trigger is subsumed exactly — an
empty table leaves every candidate missing), a complete table burns
zero ``lite`` calls. It is per-folder fail-soft (a ``lite`` outage
keeps the failed folders' previous rows — or leaves the row absent
— and never flips the run to ``failed``) and only flushes — this
run's own short-lived session commits (the phase-53 convention), so
a folder failure never blocks step 6's bump;
6. when the import changed the KB (added + updated + pruned > 0 — the
saved-chat invalidation gate, phase 53 task 02: a pruned document
can invalidate a saved answer that cited it, deliberately broader
than step 5's overview gate), the single-row ``sources_meta``
version counter is bumped exactly once in a short-lived session and
the resulting generation lands in the status detail as
``sources_version`` (an unchanged re-sync reports the current
generation without advancing it). A FAILED sync never bumps — the
run aborts in the ``failed`` state before this step.
Status is in memory: a restart mid-sync loses the running state
(accepted — the next click re-syncs idempotently). The status also
carries the phase-64 per-file progress — ``current_file`` (the
``source/relative/path`` the import is processing right now) plus
``files_done`` / ``files_total`` — null/0/0 before the import starts
(clone/pull reports no file yet) and in terminal states, which clear
``current_file`` but keep the run's final counts.
Phase 98 (task 01) adds the run's PHASE machine — ``phase`` is the
pipeline stage the run is in: the model-check + clone/pull prelude
reports ``null`` (the bare "Syncing…" label stays), then ``"import"``
(set immediately before ``import_sources``), ``"overview"`` (set
before ``regenerate_overview`` — a changed KB only), and
``"summaries"`` (set before a folder-summary generation — the
changed-KB full regeneration or the unchanged-walk gap-fill; the
no-gap skip sets NO phase and the run stays ``"import"``). While in
``"summaries"`` the generator's ``on_progress`` hook fills
``current_summary`` (the ``source`` / ``source/folder_path`` being
summarized — the bare source name for the source-root row) plus
``summaries_done`` / ``summaries_total`` — the per-folder position
through the long summary span where the file count sits still.
Terminal states (success AND failed) clear ``phase`` +
``current_summary`` but keep the run's final ``summaries_done`` /
``summaries_total`` (the phase-64 keep-final-counts convention).
The ``failed`` state's ``error`` string is masked by the shared
sanitizer — the ``user:pass@`` masker now lives in :mod:`app.core.errors`
(imported here under the private name ``_sanitize_error``).
"""
from __future__ import annotations
import asyncio
import logging
from dataclasses import dataclass, field
from datetime import UTC, datetime
from pathlib import Path
from typing import Any, Literal
from fastapi import APIRouter, Depends, HTTPException
from app.config import get_settings
from app.core.auth import require_admin
from app.core.errors import sanitize_error as _sanitize_error
from app.db import SessionLocal
from app.rag.folder_summaries import generate_folder_summaries, missing_folder_summaries
from app.rag.git_sources import clone_url_for, effective_sources
from app.rag.importer import ImportSummary, import_sources
from app.rag.llm import LLMClient, check_models
from app.rag.overview import regenerate_overview
from app.rag.sources_meta import bump_sources_version, current_sources_version
from scripts.git_sync import GitSyncError, clone_or_pull, file_commit_dates
from scripts.import_docs import repo_name
logger = logging.getLogger("app.api.sync")
router = APIRouter(
prefix="/sync",
tags=["sync"],
dependencies=[Depends(require_admin)], # phase 16 pattern: admin-only surface
)
@dataclass
class SyncStatus:
"""In-memory state of the (at most one) in-flight sync run.
``state`` is a four-state machine: ``idle`` (never run / reset),
``running``, ``success``, ``failed``. Terminal states carry the run's
``detail`` (success) or ``error`` (failure) so the UI can render the
last result after a page reload (task 02's re-attach behavior).
Phase 64 (task 02) progress fields: ``current_file`` is the
``source/relative/path`` the import is processing right now (null
outside the import phase — clone/pull first, terminal states
after); ``files_done`` / ``files_total`` carry the hook's
done/total position and survive a terminal state (the run's last
position is useful context next to the error).
Phase 98 (task 01) phase fields: ``phase`` is the pipeline stage
(null in the model-check + clone/pull prelude and in terminal
states — the module docstring's phase machine); while in the
``"summaries"`` phase, ``current_summary`` is the source /
``source/folder_path`` the generator is summarizing right now and
``summaries_done`` / ``summaries_total`` carry the generator's
progress hook's position. Terminal states clear ``phase`` +
``current_summary`` but keep the run's final summary counts (the
phase-64 keep-final-counts convention).
"""
state: Literal["idle", "running", "success", "failed"] = "idle"
started_at: datetime | None = None
finished_at: datetime | None = None
detail: dict[str, Any] = field(default_factory=dict)
error: str | None = None
# Phase 64 (task 02): per-file progress — the file the import is
# processing right now and the hook's done/total position.
current_file: str | None = None
files_done: int = 0
files_total: int = 0
# Phase 98 (task 01): the phase machine — the pipeline stage the
# run is in and, while in the folder-summary phase, the folder
# being summarized plus the hook's done/total position.
phase: Literal["import", "overview", "summaries"] | None = None
current_summary: str | None = None
summaries_done: int = 0
summaries_total: int = 0
_status = SyncStatus()
_task: asyncio.Task[None] | None = None
@router.get("/status")
def sync_status() -> dict[str, Any]:
"""Current sync state (the UI polls this every 2 s — task 02).
``started_at`` / ``finished_at`` are ISO-8601 strings or null.
``current_file`` (phase 64) is the ``source/relative/path`` the
import is processing right now — null during the clone/pull phase
and in terminal states; ``files_done`` / ``files_total`` carry the
hook's position (0/0 idle). ``phase`` (phase 98) is the pipeline
stage — null in the prelude and terminal states; while in
``"summaries"``, ``current_summary`` + ``summaries_done`` /
``summaries_total`` carry the generator's position (the terminal
keeps the final summary counts).
"""
return {
"state": _status.state,
"started_at": _status.started_at.isoformat() if _status.started_at else None,
"finished_at": _status.finished_at.isoformat() if _status.finished_at else None,
"detail": _status.detail,
"error": _status.error,
"current_file": _status.current_file,
"files_done": _status.files_done,
"files_total": _status.files_total,
# Phase 98 (task 01): the phase machine — null/0/0 idle (the
# dataclass defaults) and in terminal states (which clear
# phase + current_summary but keep the final summary counts).
"phase": _status.phase,
"current_summary": _status.current_summary,
"summaries_done": _status.summaries_done,
"summaries_total": _status.summaries_total,
}
@router.post("", status_code=202)
async def start_sync() -> dict[str, str]:
"""Start the clone → import → overview sync as a background task.
202 + ``sync started`` kicks off :func:`_run_sync` on the app's event
loop. 409 when a run is already in flight (one sync at a time — the
status endpoint is the single source of truth for the run, and the
UI re-attaches to it rather than starting a second one).
"""
global _task
if _task is not None and not _task.done():
raise HTTPException(status_code=409, detail="a sync is already running")
_task = asyncio.create_task(_run_sync())
return {"detail": "sync started"}
async def _run_sync() -> None:
"""The full sync pipeline, one in-process background task.
Every failure mode (git, embeddings, anything else) lands in the
``failed`` state with a sanitized ``error`` string — a background
task must die in state, never as an unobserved exception.
``CancelledError`` is deliberately *not* caught: app shutdown
cancels the task, and swallowing that would mask a real stop.
"""
_status.state = "running"
_status.started_at = datetime.now(UTC)
_status.finished_at = None
_status.detail = {}
_status.error = None
# Phase 64 (task 02): the progress fields reset with the run — no
# current file until the import starts (the clone/pull phase).
_status.current_file = None
_status.files_done = 0
_status.files_total = 0
# Phase 98 (task 01): the phase fields reset with the run — no
# phase until the import starts (the model-check + clone/pull
# prelude reports null), no folder until the summary span starts.
_status.phase = None
_status.current_summary = None
_status.summaries_done = 0
_status.summaries_total = 0
try:
settings = get_settings()
# Step 1 (phase 41): fail fast — verify both models the sync
# needs (embed + summary) before source resolution or any
# clone. The client is reused for the import + overview below.
llm = LLMClient()
await check_models(llm)
# The background task has no request session: open a short-lived
# one around the shared phase-35/38 resolver (DB rows of both
# kinds win; the BOR_GIT_SOURCES git list is a fallback while
# the table is empty).
db = SessionLocal()
try:
rows, origin = effective_sources(db)
finally:
db.close()
if not rows:
# The button targets the admin-managed source registry
# (manual --source dirs have no repo to clone) — an empty
# config on *both* origins (no git rows, no local rows, no
# env URLs) fails loudly instead of silently importing the
# legacy directories.
raise GitSyncError("no sources configured (git or local)")
git_count = sum(1 for row in rows if row.kind == "git")
logger.info(
"sync: started repos=%d origin=%s git=%d local=%d",
len(rows), origin, git_count, len(rows) - git_count,
)
sources_root = Path(settings.sources_dir).expanduser()
sources: list[Path] = []
ignore_by_root: dict[str, list[str]] = {}
include_hidden_by_root: dict[str, bool] = {}
doc_dates_by_root: dict[str, dict[str, datetime]] = {}
for row in rows:
if row.kind == "git":
# Phase 121: the token column is injected into the clone
# URL ONLY here (clone_url_for — NULL token → the bare
# stored URL verbatim); repo_name stays on the bare URL
# so the checkout directory name is credential-free.
root = clone_or_pull(clone_url_for(row), sources_root / repo_name(row.url))
# Phase 106 (D2): the checkout's per-file last-commit
# dates, keyed by the SAME root string the importer
# sees (full-history checkouts → true per-file
# last-commit dates for every git source — phase 107
# D11 supersedes phase 106 D10's shallow tip-date
# behavior). Local rows contribute nothing — the
# importer's mtime fallback applies to them.
doc_dates_by_root[str(root)] = file_commit_dates(root)
else:
# kind=local — the stored expanded path (phase 38 also
# mirrors it in the NOT-NULL ``url`` location column, the
# ``or`` keeps the type checker honest); re-verified at
# sync time because the directory may have moved or been
# deleted since add-time.
root = Path(row.path or row.url).expanduser()
if not root.is_dir():
raise GitSyncError(f"local source missing: {root}")
sources.append(root)
# Phase 89: the row's ignore list, keyed by the SAME root
# string the importer sees; two rows sharing a root string
# get the union (extend, not replace) — the sibling/repo-name
# edge.
if row.ignore_paths:
ignore_by_root.setdefault(str(root), []).extend(row.ignore_paths)
# Phase 105 (A1/A4): the row's hidden-folders flag, keyed by
# the SAME root string the importer sees; a shared-root
# collision ORs — if EITHER row says "index hidden", the
# root does (the ignore-map union's boolean mirror).
include_hidden_by_root[str(root)] = (
include_hidden_by_root.get(str(root), False)
or bool(row.include_hidden)
)
# Phase 64 (task 02): the per-file progress hook — the status
# endpoint reports the file being processed right now. The
# closure captures the module ``_status`` exactly like the state
# assignments above.
def _hook(source: str, rel: str, done: int, total: int) -> None:
_status.current_file = f"{source}/{rel}"
_status.files_done = done
_status.files_total = total
# Phase 98 (task 01): the phase machine — the import phase
# starts NOW (the model-check + clone/pull prelude above
# reported ``phase: null``).
_status.phase = "import"
summary: ImportSummary = await import_sources(
sources, llm, prune=True, progress=_hook, ignore_by_root=ignore_by_root,
include_hidden_by_root=include_hidden_by_root,
doc_dates_by_root=doc_dates_by_root,
)
overview = False
if summary.added + summary.updated > 0:
_status.phase = "overview" # phase 98 (task 01)
overview = await regenerate_overview(llm)
# Phase 94 (task 02), phase 96 (task 03): the folder
# summaries — the drill-down ls's per-level descriptions. A
# changed KB (added + updated > 0) is a full regeneration
# (today's behavior, byte-identical); an unchanged re-sync
# takes the GAP probe instead of the old table-empty one — a
# candidate folder (at least 1 doc — every existing folder)
# with no stored row: a gap
# fills ONLY the missing rows (only_missing=True — the
# subsumed table-empty first-sync trigger included, where
# every candidate is missing), a complete table burns zero
# lite calls. The generator is per-folder fail-soft (a lite
# outage never flips the run to failed) and only flushes: this
# run's own short-lived session commits (the phase-53
# convention), so the step-6 bump stays change-gated on the KB,
# not on the summaries. The status surface is the PHASE
# machine (phase 98, task 01): the stats dict itself stays
# log-only (the detail shape is untouched).
# Phase 98 (task 01): the folder-summary progress hook — the
# closure-captures-``_status`` convention the file's ``_hook``
# above already uses; the generator's ``total`` (the loop-start
# candidate count) and the bare source name for the root row
# come straight from the hook's arguments (D5's shape).
def _summary_hook(done: int, total: int, source: str, folder_path: str) -> None:
_status.current_summary = (
source if folder_path == "" else f"{source}/{folder_path}"
)
_status.summaries_done = done
_status.summaries_total = total
fs_db = SessionLocal()
try:
if summary.added + summary.updated > 0:
# Changed KB: full regeneration — the summaries phase
# starts now, and the hook reports the per-folder
# position through the (long) span.
_status.phase = "summaries"
folder_stats = await generate_folder_summaries(
fs_db, llm, on_progress=_summary_hook
)
fs_db.commit()
logger.info("sync: folder_summaries stats=%s", folder_stats)
else:
missing = missing_folder_summaries(fs_db)
if missing:
# Unchanged-walk gap-fill: the SAME summaries
# phase + hook (the fill's total is the missing
# count — the hook's loop-start ``total``).
_status.phase = "summaries"
folder_stats = await generate_folder_summaries(
fs_db, llm, only_missing=True, on_progress=_summary_hook
)
fs_db.commit()
logger.info(
"sync: folder_summaries gap-fill missing=%d stats=%s",
len(missing), folder_stats,
)
else:
# The no-gap skip sets NO phase — the run stays
# "import" through to the terminal (the phase-64
# bare-label pin holds for this shape).
logger.info("sync: folder_summaries skipped (KB unchanged)")
finally:
fs_db.close()
# Phase 53 (task 02): a sync that changed the KB advances the
# sources version exactly once — the saved-chat invalidation
# marker (task 03 stamps rows against it). The gate is
# deliberately broader than the overview's above: a pruned
# document can invalidate a saved answer that cited it, so
# ``pruned > 0`` bumps too. The bump commits in its own short
# session (the ``effective_sources`` pattern above), so it
# lands even if the best-effort overview then fails — the index
# really did change. An unchanged re-sync never bumps; it
# reports the current generation instead, so the detail always
# carries the generation the KB is now at.
db = SessionLocal()
try:
if summary.added + summary.updated + summary.pruned > 0:
sources_version = bump_sources_version(db)
db.commit()
else:
sources_version = current_sources_version(db)
finally:
db.close()
_status.state = "success"
_status.finished_at = datetime.now(UTC)
_status.current_file = None # phase 64: keep the final counts
_status.phase = None # phase 98: keep the final summary counts
_status.current_summary = None
_status.detail = {
"files": summary.files,
"added": summary.added,
"updated": summary.updated,
"unchanged": summary.unchanged,
"pruned": summary.pruned,
"errors": summary.errors,
"chunks": summary.chunks,
"summaries": summary.summaries,
"summary_errors": summary.summary_errors,
"dates_updated": summary.dates_updated,
"overview": overview,
"sources_version": sources_version,
}
logger.info("sync: done detail=%s", _status.detail)
except Exception as e: # noqa: BLE001 — a background task dies in state, see above
logger.exception("sync: failed")
_status.state = "failed"
_status.finished_at = datetime.now(UTC)
_status.error = _sanitize_error(str(e))
_status.current_file = None # phase 64: keep the final counts
_status.phase = None # phase 98: keep the final summary counts
_status.current_summary = None