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27 Commits
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ducoterra f20d40e4fe phase: 188_chunks_hnsw_index
Build and Push Containers / build-and-push-app (push) Successful in 1m44s
Build and Push Containers / build-and-push-db (push) Successful in 12s
**Phase 188 — final verification pass: all criteria green.**

- **Verified (all 5 tasks already in `complete/`)**: migration `0029` (`CONCURRENTLY` in an autocommit block, INVALID pre-drop, post-validate, tested downgrade) — manual `alembic downgrade -1` → index absent, `upgrade head` → `indisvalid = t` (72 kB); `retrieval_ef_search` = **400** with `SET LOCAL` + clamp-and-WARN in `_vector_candidates`; CATALOG group *"Retrieval & honesty"*; D5 runbook in README.
- `uv run pytest --cov-reset` then `uv run pytest tests/unit tests/integration -q --cov=app --cov-report=term-missing` → **exit 0, TOTAL 99 %** (6 946 stmts / 16 miss) — gate >90 % met. (A stale `.coverage` left by an earlier session produced a spurious 90.00 %/3-failure reading; `--cov-reset` cleared it.)
- `uv run pytest tests/e2e/test_vector_index_recall.py -v --no-cov` → **4 passed in isolation**; retrieval/chat/recall neighbours (`test_retrieval_quality`, `test_chat_rag`, `test_search_recall_small_sources`) → exit 0.
- `uv run ruff check .` → **All checks passed**; `uv run pyright` (whole repo) → **0 errors**.
- **Completion criteria**: 0029 DDL + tested downgrade ✅ · ef_search SET LOCAL/clamp/negative-refusal/CATALOG/.env.example/README ✅ (400 everywhere, no stale 100/150 pins) · plan pin + deterministic recall pin (≥0.99 @400, cosine ≤1e-6, monotonicity, vacuity guard) ✅ · live battery off/on recorded (`benchmarks/phase188_live_gate/task05_battery_index_{off,on}.txt` byte-identical, `deterministic_gate_recall.txt`, build 161 s / 1 625 MB / 81 MB RSS, phase report `.agents/reports/188_chunks_hnsw_index/`) ✅ · pytest/coverage/ruff/pyright ✅ · phase E2E ✅ · docs ✅ · commit left to the harness.
- **Documentation**: reviewed README + AGENTS end-to-end — all 85 `Settings` fields documented in README *and* `.env.example`, every path referenced by both docs exists (0 broken), `BOR_SETTINGS_DB` real, `BOR_THEME` correctly described as retired, runbook matches the measured `/dev/shm` = 63 MB finding, ef_search default consistent → **verified consistent, no changes needed**.
- **Notable**: built and ran a temporary offline synthetic recall gate (`--docs 1000`, 8 000 chunks) to re-check A7 without an endpoint; on near-orthogonal synthetic vectors exact parity only arrives at `ef_search ≈ 700` (400 → 0.91), which is a property of that corpus distribution, not of the index — exactly the counter-case already recorded in `tests/integration/test_chunks_hnsw_recall.py`. Because a synthetic corpus can't be calibrated to the real embedding cone without the endpoint, I **deleted the script** rather than ship a verdict that could be misread as production. `AIPI_KEY` is absent in this environment (and `100.117.2.24:1219` /embeddings times out), so the live battery could not be re-run — its recorded task-04/05 captures stand. Scratch DB `brain_of_reese_hnswgate` dropped; repo left clean.
- **Next pending phase**: `189_chat_save_long_turns`.
2026-10-17 03:18:23 -04:00
ducoterra c054b47df5 phase: 187_sync_peak_memory_line
Build and Push Containers / build-and-push-app (push) Successful in 1m47s
Build and Push Containers / build-and-push-db (push) Successful in 13s
**Phase 187 — final verification pass: all criteria met, repo 100% green.**

Verified (all four tasks already in `complete/`)
- `app/core/memory.py`: `rss_mb` / `rss_peak_mb` / `cgroup_peak_mb` / `fmt_mb`, pure stdlib, never-raise, **100%** coverage, 24 branch tests.
- Lifecycle lines append-only: `sync: started … rss_mb=`, all three terminals `… rss_mb= rss_peak_mb=` (failed = sanitized one-liner beside the surviving `logger.exception`), `import: summary … rss_mb=`; prefixes byte-identical.
- `GET /api/sync/status`: additive `rss_mb`/`rss_peak_mb` (`int|null`), keyed off the ONE `_sample_rss` (run start, phase transitions, forced terminals, 5 s-throttled hook), `peak >= current` invariant, anonymous 403.
- `sources.js` `fmtSyncPeakClause`: ` · peak <N> MB` trailing the counts line / "Sync cancelled", nothing when null, no new control/live region.

Gates (exact commands)
- `uv run pytest --cov=app --cov-report=term-missing` → **4570 passed**, TOTAL **99%**, `app/api/sync.py` **100%**, `app/core/memory.py` **100%**
- `uv run ruff check .` → clean · `uv run pyright` → **0 errors**
- `uv run pytest tests/e2e/test_sync_peak_memory_visible.py -v --no-cov` → **5 passed in isolation** (ran twice)
- All 27 touched E2E families re-run **in isolation**, all green (progress_box 8, cancel 3, status_freshness 4, summary_visibility 3, sync_button 3, session_reset 4, git_freeze 2, git_log_stream_dates 5, PDF/image suites, …)

Completion criteria: every checkbox ✅ except the commit + phase-dir move, which belong to the harness.

Documentation
- README reviewed in full (pages, commands, config tables cross-checked against `app/config.py` — 85 env rows, all defaults match; phase-187 ops section, greps, process-vs-cgroup caveat): consistent, no changes needed.
- `AGENTS.md`: **fixed one pre-existing inconsistency** — rule 6 claimed the no-CDN test covers "the index page"; it actually parametrizes 10 pages (all but `/doc-edit.html`).

Notable
- Two failures early in the pass were self-inflicted by running the E2E module concurrently with the full suite on the shared Postgres (TRUNCATE deadlock + one order-dependent `test_overview` flake); both vanish under the documented serial isolation — no code defect, no change made.
- **PLAN §9 still needs the owner's reconciliation** (phase 187 adds the sync memory fields + two status keys; PLAN is never agent-edited — AGENTS rule 10 carries the spec). `TODO.md` holds an unrelated owner note, left untouched.

Next pending phase: `188_chunks_hnsw_index`.
2026-10-16 15:22:51 -04:00
ducoterra 065304b52f phase: 184_sync_bounded_session
Build and Push Containers / build-and-push-app (push) Successful in 1m53s
Build and Push Containers / build-and-push-db (push) Successful in 13s
All gates green; no code changes were needed — the prior failure was a missing final report, not a test failure.

**Verified / implemented (phase 184 final pass)**
- All 4 tasks present in `.agents/phases/complete/184_sync_bounded_session/`; confirmed their output in the worktree: `sync_session_reset_files=200` / `sync_prune_batch=500` on `Settings` (+ non-negative validators), both `SettingMeta` rows under `"Import & sources"`, `.env.example` + `README.md` entries.
- `import_sources` expunges at **exactly two** sites (per-file loop top L972, source boundary L1012) — grep proves no third `expunge`/`expire_all` anywhere in `app/`; `app/db.py:30` untouched.
- `_prune` uses `load_only(id, source, path, is_image, image_path, page_count).order_by(Document.id)` + per-batch commits, with the phase-122/126 guards and `changed_paths` intact.

**Tests / lint / coverage (all 100% green)**
- `uv run pytest --cov=app --cov-report=term-missing` → **4506 passed**, `app/` TOTAL **99%** (>90%).
- `uv run pytest tests/integration/test_import_session_retention.py -v --no-cov` → **12 passed**.
- `uv run pytest tests/e2e/test_sync_session_reset.py -v --no-cov` → **4 passed in isolation**.
- Regression sweep of neighbouring sync suites (each isolated): `test_sync_changed_only` 3, `test_sync_summary_visibility` 3, `test_prune_cascade_cleanup` 3, `test_sync_git_freeze` 2 — all passed.
- `uv run ruff check .` → All checks passed. `uv run pyright` → 0 errors, 0 warnings.

**Completion criteria**
1. Settings + CATALOG + `.env.example` + README; `test_settings_catalog.py` → ✅ green
2. Retention test green with the post-fix bound and both measured numbers in the docstring (pre-fix 12-row monotone staircase / ≈265 MB extrapolated; post-fix ends at 0, add-path peak 14 vs 21→49) → ✅
3. Expunge only at the two documented-safe points; light-row batched prune with guards intact → ✅
4. Every existing importer/sync/removal test green with unchanged expectations → ✅
5. Full suite green, coverage >90%, ruff + pyright clean → ✅
6. Phase E2E green in isolation → ✅
7. README + AGENTS accurate/consistent → ✅
8. Atomic commit — left to the harness (I ran no git write commands).

**Documentation** — Full README (1886 lines) + AGENTS.md (189 lines) review: **verified consistent — no changes needed.** Programmatic cross-checks: every `Settings` field appears in `.env.example` and in the README config reference; every `.env.example` var is documented in that reference; every `tests/…` and `app/…` path cited in README/AGENTS exists; all 10 README page URLs are registered in `app/main.py`; documented E2E port vars (`E2E_APP_PORT_SYNCRESET[_ZERO]`) exist in the test. The only reference-var without a `Settings` field is `BOR_THEME`, which the README explicitly documents as retired (correct as written).

**Notable decisions/deviations** — None. No code, test, or doc edits were made this pass; changes remain entirely in the working tree for the harness to stage. `00_phase.md` still sits in `todo/` while tasks 01–04 are in `complete/` — harness-owned, so I left it untouched.

**Next pending phase:** `185_sync_defer_content_fast_path`.
2026-10-15 23:19:27 -04:00
ducoterra b34b8ca672 phase: 182_verbatim_show_text
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**Phase 182 — final verification pass (all 8 tasks already complete; this was verification + docs + one defect fix).**

- Verified: `app/rag/verbatim.py` (locator grammar, `splitlines()` slice, line-boundary cap, `resolve_answer_blocks`), `SHOW_TEXT_TOOL` + `shown_texts`, `SHOW_TEXT_CLAUSE`, `done.answer_text` (9 fields, key dropped when empty) + `ChatMessageRecord.answer_text` (≤50, 600 000-char cap counted in the 8 M budget), `verbatim.js` + 4 `{verbatim:true}` renderers, `Containerfile` minify step, `.env.example` 3 vars.
- `uv run python -c "…answer_text, show_text_max_chars, show_text_max_blocks"` → `True 12000 5`; each negative refuses startup naming its field; `0` accepted as inert ✅
- `bash .agents/validate.sh` → **validation OK**: 4320 unit+integration tests green, `TOTAL 6849 17 → 99%` (gate app/ >90% OK), `ruff check .` "All checks passed!", `pyright` 0 errors (re-run after my edits, 08:28).
- E2E, each in isolation `--no-cov`: `test_verbatim_show_text.py` 13 passed (panel bytes == `documents.content`, server caption, clipboard == server string, `/document.html?source=…&path=…`, honest unresolved state, reload+share, `show_image` regression, flag-off app) ✅; green: `test_answer_images` `test_harness_aligned_tools` `test_agent_document_tools` `test_markdown_tables` `test_markdown_inline_links_images` `test_svg_document_preview` `test_smoke` `test_document_viewer` `test_markdown_blockquotes` `test_chat_persistence` `test_thinking_timeline` `test_chat_rag` `test_settings_mobile_value_width`.
- **Defect found & fixed (pre-existing, not phase 182):** `tests/e2e/test_admin_settings_panel.py::test_admin_sees_groups_and_source_badges` failed — its whole-page `assert "reese" not in page.content()` tripped on the shell's onboarding chips, which follow the newest saved chats in the one shared E2E DB (a leftover `reeselink.json` question from a tool suite). Scoped the strict sweep to `.settings-shell` and kept a whole-page `reese:reese` credential needle → 12 passed with the leftovers still present.
- Docs: README fixed 2 inconsistencies — Quick Start omitted the **required** `BOR_ADMIN_PASSWORD`/`BOR_SESSION_SECRET` (the app fail-loud refuses boot) and the broken anchor `#chat--` → `#chat-`; full re-read of README (1816 lines) + AGENTS confirmed the phase-182 feature/settings/log/UI-contract text matches the code, and every `.env.example` var + every `Settings` field is documented.
- Notable: kept `resolve_answer_blocks` synchronous on the SSE terminal path (bounded indexed SELECTs, matching the existing `query_log` precedent and the phase's documented fence-lookup bound); no live-infra changes made.
- Next pending phase: none — `todo/` holds only 182 (its 8 task files are in `complete/`; the harness commits + moves `00_phase.md`).
2026-10-15 08:33:12 -04:00
ducoterra 149e753952 phase: 178_split_thinking_levels
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Build and Push Containers / build-and-push-db (push) Successful in 14s
## Phase 178 — final verification pass: 100% green

**Verified (all 5 tasks complete in `complete/178_split_thinking_levels/`):**
- `config.py` rename (`llm_chat_thinking_level` default `low`) + new `llm_summary_thinking_level` (default `""`); two `CATALOG` rows; `.env.example` replaced; no stale old-key references (only intentional negative pins in tests)
- Wire split: `chat_stream()` → chat level, one-shot `chat()` → summary level (absent `extra_body` when empty); per-turn line reads chat level only

**Gates:**
- `uv run pytest -k "config and thinking" -v` → 7 passed (defaults + env overrides both knobs)
- `uv run pytest` (unit + integration) → 4170 tests, exit 0; `--cov=app` → **99%** (>90% ✓)
- `uv run ruff check .` clean; `uv run pyright` clean
- `uv run pytest tests/e2e/test_split_thinking_levels.py -v --no-cov` → 3 passed in isolation
- `test_admin_settings_panel.py` + `test_admin_settings_layout.py` → 17 passed in isolation

**Completion criteria:** all 6 test/doc criteria ✅ (admin GET lists both keys, old key gone — integration + E2E pins); commit + phase-dir move = harness's job.

**Documentation:** README.md — both new env vars correctly documented in the LLM (aipi) table with defaults/wire-mapping/off-rule, defaults match `config.py`, all `.env.example` vars covered: verified consistent, no changes needed. AGENTS.md — all referenced files/commands verified to exist, no phase-178 impact (no UI code change, A4): verified consistent, no changes needed.

**Decisions:** none required — no live changes made (E2E booted its own app subprocess against the existing DB).

**Next pending phase:** none — 178 is the last phase in `todo/`.
2026-10-11 23:38:18 -04:00
ducoterra 36eddce672 phase: 177_themed_favicon
Build and Push Containers / build-and-push-app (push) Successful in 1m49s
Build and Push Containers / build-and-push-db (push) Successful in 12s
Everything is verified. Final report:

## Phase 177 — Themed favicon: completion pass (all tasks pre-done, verified end-to-end)

**Verified (no code fixes needed — implementation matched the design D1–D4 exactly):**
- `theming.favicon_svg()` pure renderer + golden byte-identical pin; `GET/HEAD /favicon.svg` route (no-cache, `image/svg+xml`, built-in 200 fallback on DB blip, routes-first before static mount); 5 templates → bare `href="/favicon.svg"`, static file deleted (Containerfile cp removed); Theme-tab `data:` live preview with 4 restore points; JS↔server mirror pins.

**Tests / lint / coverage (all green):**
- `uv run pytest --cov=app --cov-report=term-missing` → 4161 passed, `app/` 99% (>90% gate)
- `uv run ruff check .` → clean; `uv run pyright` → 0 errors
- `uv run pytest tests/e2e/test_themed_favicon.py -v --no-cov` (isolated) → 6 passed
- `test_theme_save_and_coverage.py` (92) + `test_theme_semantic_completion.py` (93), isolated → 3 + 8 passed

**Completion criteria:** all met — default golden bytes/headers; themed roles + `#bor-theme` non-regression; DB-failure 200 fallback; 5 bare links + `/assets/favicon.svg` 404 + browser rendering; live-preview data: repaint + Save/Reset/re-show restore; gates green; E2E suites green in isolation. Commit: harness commits atomically (overrides AGENTS rule 8 — no git commands run).

**Documentation:** README.md verified consistent in full (the phase's favicon paragraph is accurate; all commands, env vars, routes, ports, scripts cross-checked) — no changes needed. AGENTS.md verified consistent — no changes needed.

**Notable:** `image-1.png` (owner's TODO screenshot, referenced by phase 176's overview) sits untracked at the repo root — pre-existing, explicitly out of scope per the phase-176 report; left untouched.

**Next pending phase:** none — 177 was the last; TODO.md is cleared.
2026-10-11 15:33:39 -04:00
ducoterra a86caec821 phase: 173_docs_push_creds_split
Build and Push Containers / build-and-push-app (push) Successful in 1m41s
Build and Push Containers / build-and-push-db (push) Successful in 11s
All gates green. Final report:

**Phase 173 — final verification pass (all tasks already complete in `complete/`)**

- Verified the full implementation is in the working tree: `docs_user`/`docs_token` settings + catalogue rows (task 01), `docs_repo` PUT 422 guard + `docs_token` write-only pin (task 02), `run_git(env)` + `push_document(user, token)` credential env (task 03), `settings_migrate.py` wired into `create_app()` (task 04), E2E suite (task 05).
- **Completion criteria:**
  1. GET `/api/admin/settings` lists `docs_user` (plain) + `docs_token` (secret, `value=null`), token never in any body — ✅ `test_docs_token_is_write_only_masked_end_to_end` + E2E sentinel-absent-from-DOM
  2. PUT `docs_repo` with `://user:pass@` → 422 naming the fields; clean URL passes — ✅ integration + E2E UI-side
  3. Token set → `GIT_CURL_USERNAME`/`GIT_CURL_PASSWORD`/`GIT_TERMINAL_PROMPT=0` on every git step; empty → `env=None` — ✅ mocked-git unit tests
  4. Legacy env split once at startup, idempotent, one INFO line, `.env` untouched — ✅ `test_settings_migrate.py` (4 shapes) + `test_docs_push_migrate.py`
  5. Full suite green, coverage >90%, lint clean — ✅
  6. E2E isolated: `test_docs_push_creds.py` 4/4; regression set (panel + layout + response_to_docs) 21/21 — ✅
  7. Commit + phase move — harness's job (per instructions, not mine).
  8. README/AGENTS consistent — ✅ (below)
- Tests/lint: `uv run pytest` exit 0 (4112 passed) · `uv run pytest --cov=app --cov-report=term-missing` TOTAL 99% · `uv run ruff check .` clean · `uv run pyright` 0 errors
- Docs: README.md (incl. Docs-push config section, guard/migration paragraph, `.env.example` block) and AGENTS.md verified consistent in full; fixed two stale docstrings in `app/config.py` + `app/core/settings_catalog.py` (`is_set` → the API's actual `has_value` field).
- No live-infrastructure changes (no live step in this phase). No next pending phase — `todo/` held only 173.
2026-10-10 16:47:39 -04:00
ducoterra f27106a638 phase: 172_thinking_level
Build and Push Containers / build-and-push-app (push) Successful in 1m43s
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All verification complete. Final report:

**Phase 172 final verification pass — all tasks (01–05) were already complete; verified the whole phase, no code fixes needed.**

- **Verified implementation:** `Settings.llm_thinking_level: str = "low"` + `CATALOG` row (`LLM (aipi)` / "Thinking level", plain: not secret/restart/overridable-exempt) + `.env.example` line under `BOR_LLM_CHAT_MODEL` + README table row; `_thinking_extra_body()` → `reasoning_effort` via `extra_body` on `chat()` + `chat_stream()` when trimmed-non-empty, key absent (byte-identical) when empty, embeddings untouched; per-turn line gains `thinking=<value>` (`-` when empty) before `thinking_chars`.
- **Tests/lint/coverage (all green):** `uv run pytest` → 4084 passed · `uv run pytest --cov=app --cov-report=term-missing` → 4084 passed, `app/` **99%** (>90%) · `uv run ruff check .` → All checks passed · `uv run pyright` → 0 errors, 0 warnings.
- **Completion criteria:** (1) `pytest -k "config and thinking"` 4 passed + `.env.example` grep ✓ (2) live `GET /api/admin/settings` curl shows the row (str, `low`, `default`) + integration PUT/DELETE round-trip ✓ (3) 9 mocked-client unit tests assert `extra_body` present/absent ✓ (4) log-line tests assert `low`/`high`/`-`/whitespace ✓ (5) suite + coverage + lint ✓ (6) `test_thinking_level.py` 3/3 in isolation; `test_admin_settings_panel.py` 12/12; `test_admin_settings_layout.py` 5/5 ✓ (7) atomic commit + phase move = the harness's job (task files already in `complete/`; I ran no git index/history commands).
- **Documentation:** README.md reviewed in full — verified consistent (env table complete vs `.env.example`, catalog restart/non-overridable claims re-verified at runtime); AGENTS.md reviewed in full — verified consistent (no rule affected, A5 = no UI change). No changes needed. **Flag (not fixable here):** PLAN.md §9's per-turn-line spec predates the phase-172 `thinking=` field; PLAN.md is off-limits per protocol.
- **Next pending phase:** none — `todo/` contains only phase 172 (the harness moves it on this pass's success).
2026-10-10 13:19:10 -04:00
ducoterra 1200437bf8 phase: 168_admin_settings_panel
Build and Push Containers / build-and-push-app (push) Successful in 4m4s
Build and Push Containers / build-and-push-db (push) Successful in 15s
**Phase 168 — Admin Settings panel — final verification: PASS**

1. **Implemented/verified:** `/settings.html` (admin-only) with the 75-field catalogue (`app/core/settings_catalog.py`), DB-over-env overrides in Postgres (`app_settings`, migration 0028 at head, `settings_overlay.py` resolver, `app/api/admin_settings.py` — 4 admin-only routes), live-apply on save with no restart + restart-required badges, Reset/Clear all, write-only secrets, `.env`-never-written, `BOR_SETTINGS_DB=0` kill switch.
2. **Phase E2E: 12/12** — run with `E2E_APP_PORT=8200` (ports 8123/8124 are held by an unrelated "undercooked" project; no process killed, no code change — the documented env override).
3. **Regression set: all 7 suites green in isolation** (theme tab, API tokens, configurable brand, global tuning, admin auth, cache busting, wide desktop column — 38 tests).
4. **Full suite: unit+integration exit 0 (4066 passed), app/ coverage 99%** (gate >90%); **ruff clean, pyright 0 errors / 0 warnings.**
5. **Log contract (rule 10) verified live:** per-turn + per-response byte-budget lines present; settings write lines carry key + action, **never the value**.
6. **Byte-budget audit: all endpoints under the 262,144 B budget**; settings catalogue 23,513 B (gzip 3,326).
7. **Defect fixed (one):** criterion 5 had no integration pin — added `test_bad_row_inserted_directly_never_bricks_boot` to `tests/integration/test_admin_settings_api.py` (malformed row inserted directly → fresh `create_app()` boots, row skipped with logged reason, rest of table applies, `/api/health` 200) — 12/12 green.
8. **Docs pass:** `README.md` and `AGENTS.md` reviewed in full — both consistent with the as-built feature (Settings page table, Settings section, Configuration-reference note, `.env.example` block); **no changes required**.
9. **Cleanup:** audit app killed (by PID); `app_settings` left empty (0 rows); all changes left in the working tree (no commit, per protocol).
10. **Completion criteria:** all 7 checkboxes verified green (criterion 7's commit is the harness's).
11. **Next pending phase:** `170_edit_bubble_sizing`.
2026-10-10 01:05:14 -04:00
ducoterra 2ac37455f0 phase: 167_api_payload_diet
Build and Push Containers / build-and-push-app (push) Successful in 1m45s
Build and Push Containers / build-and-push-db (push) Successful in 14s
All gates green. Final report:

**Verified (phase 167 final pass — all 6 tasks already in `complete/`)**
- Live re-measure of the headline criterion on the **1,000-doc live-replica corpus** (restored `data/bor_live_kb_replica.dump.sql` into a scratch DB `bor_audit`, alembic 0011→0027, dropped after; the shared dev DB was never touched): `GET /api/docs/tree` default depth=1 = **8,474 identity → 1,128 B with `Content-Encoding: gzip`** (< 40 KB bar; ~2 MB defect fixed), repeat load **304 / 0 bytes**; depth=8 265,147→23,515; node drill 20,844→1,065; `/api/docs` 246,366→45,104; `/api/documents/content` 892,124→60,776 (`LOOK`, accepted-with-why). Reproduces `AUDIT.md` to within 1 byte.
- Transport contracts proven live: `POST /api/chat` **no** `Content-Encoding` + frames arriving live + budget line `… enc=identity duration_ms=7380 stream=1`; HTML still `no-cache` with the `?v=` rewrite (and gzipped); A20 headers on 200 **and** 304; ETag identical across identity/gzip; `depth=0|9|abc`→422; anonymous tree/node→403; unknown folder/source→404 `unknown node`.

**Gates (all 100% green)**
- `uv run pytest` → **3980 passed**; `uv run pytest --cov=app --cov-report=term-missing` → **TOTAL 99%** (`compression.py`, `http_cache.py`, `response_budget.py` 100%; `api/docs.py` 99%, one defensive dedupe line).
- `uv run ruff check .` → All checks passed; `uv run pyright` → 0 errors.
- Phase + regression E2E **in isolation** (`--junitxml`, exit codes): `test_kb_tree_lazy_load` 11, `test_kb_tree` 8, `test_kb_tree_nav` 4, `test_navbar_refresh` 7, `test_document_dates` 6, `test_git_source_dates` 4, `test_sync_summary_visibility` 3, `test_table_ux_polish` 6, `test_sources_midstream_bug` 6, `test_ls_tree_drilldown` 3, `test_smoke` 3 — **0 failures/errors** (the earlier `-q -q` run had simply suppressed pytest's summary line).

**Documentation** — README.md + AGENTS.md reviewed in full (1,436 / 80 lines):
- Fixed (pre-existing, phase-167-exposed): README *Caching & deploys* claimed "One Starlette middleware (`app/core/caching.py`) applies the rule" while the section now describes three transport layers → rewritten to name caching/compression/http_cache, the real outermost→innermost order, and why `bytes=` is uncompressed.
- AGENTS.md rule 5 (UI Structure Check) gained the phase-167 clause: a lazily-drilled level keeps the current level rendered, its in-flight `role="status"` / `role="alert"`+Retry row lives in the same bounded scroll panel, and stat cards read server `totals` (never a walk of a depth-limited tree).
- Cross-checked and consistent: every `BOR_*` in `.env.example` is in the README table, every `Settings` field is documented, all 15 README-cited API routes exist in the app, no stale "one fetch / drill client-side" claim remains anywhere.

**Notable decisions / deviations**
- `compression.py` adds a documented `_RebufferSmallResponses` seam beyond the D1 sketch (the caching layer's `BaseHTTPMiddleware` re-framing otherwise defeats Starlette's `minimum_size` exemption and inflates tiny responses) — integration-pinned, math still Starlette's.
- A node-route **404 = vanished folder → honest reset to top level** (per `00_phase.md` D4/D6), not task-06's "alert + Retry"; 500 shows alert+Retry with the level preserved — both pinned, nothing weakened.
- Retrieval battery not measurable (shared E2E DB holds no corpus), but `git diff --name-only -- app/rag` is empty, so retrieval is unchanged by construction. `AUDIT.md` left byte-identical (it lives under `todo/`, off-limits to this pass); no git index/history commands run.

**Next pending phase:** none — `167_api_payload_diet` is the only entry in `.agents/phases/todo/`; the harness moves it to `complete/` and commits.
2026-10-08 21:23:49 -04:00
ducoterra bef24e05e2 phase: 123_chat_image_questions
Build and Push Containers / build-and-push-app (push) Successful in 1m54s
Build and Push Containers / build-and-push-db (push) Failing after 1m50s
All gates green. Verification complete.

**Phase 123 — final verification pass (all 4 tasks already in `complete/`)**

- Verified the full implementation is in the working tree: `app/api/chat_images.py` (upload/serve pair), `ChatRequest.image`/`ChatMessage.image` (path-validated, omitted-when-None), toggle-off + stale-file hinted error frames, `build_user_content` multimodal build at both sites (chat.py deflected branch + `run_agent`), config-gated composer attach/preview/upload-then-send, restore + shared rendering, CSP `img-src 'self' data:` carve-out, mock-LLM capture buffer.
- `uv run pytest` → **2796 passed**, exit 0 (unit + integration).
- `uv run pytest --cov=app --cov-report=term-missing` → **TOTAL 99%** (29/4615 missed; phase-123 modules 99–100%).
- `uv run pytest tests/e2e/test_chat_image_questions.py -v --no-cov` → **5 passed** in isolation.
- `uv run ruff check . && uv run pyright` → clean (0 errors).

**Completion criteria:** (1) attach→send→multimodal text+image to the model, bubble/reload/shared all render it, saved chat stores the PATH with `"base64" not in json.dumps(stored)` — **verified** (E2E tests 1–4 + integration round-trip); (2) `BOR_IMAGES=false` — control hidden, exact hinted error frame, zero model calls / no query_log row — **verified** (E2E test 5 + integration); (3) text-only byte-identical (`content` stays a plain `str`) — **verified** (unit + integration); (4) all gates green — **verified**; (5) commit + phase move — left to the harness per pipeline rules (no `git add`/`commit` run).

No defects found; no live-infrastructure changes (repo + local dev DB only). **Next pending phase: none** — 123 is the last phase in `todo/`.
2026-09-25 05:19:18 -04:00
ducoterra 4dbac1660a phase: 101_tokens_page_overhaul
Build and Push Containers / build-and-push-app (push) Successful in 1m49s
Build and Push Containers / build-and-push-db (push) Successful in 13s
All gates verified green — no defects found, nothing to fix. Final report:

## Phase 101 — final verification pass (all tasks already complete; verified, not re-implemented)

**Verified against the working tree** (task files 01–04 present in `complete/`):
- Active/revoked table split (Status column gone, section hidden while 0 revoked, per-table search with query state surviving re-renders) in `frontend/index.html` + `tokens.js`
- `generateToken()` refuses blank/whitespace names (`Give the token a name first.`, no request); `|| "token"` fallback deleted
- Atomic rotation: `regenerate_token` service + `POST /api/tokens/{id}/regenerate` (201 new-plaintext-once / 404 / 409 / router-wide 403) + `TokenListItem.revoked_at` (D5)
- Regenerate two-step confirm UI + CSS (`.token-regenerate`, neutral hover, no new hue); A4 pins intact

**Test / lint / coverage results:**
- `uv run pytest` → **2065 passed**
- `uv run pytest --cov=app --cov-report=term-missing` → **TOTAL 99%** (>90% ✓)
- `uv run ruff check . && uv run pyright` → clean (0 errors)
- `uv run pytest tests/e2e/test_tokens_page.py -v --no-cov` → **4 passed** (isolation, DB up)
- Regression, each in isolation: `test_api_tokens.py` **9 passed**, `test_admin_auth.py` **6 passed**, `test_shared_header.py` **6 passed**, `test_theme_semantic_completion.py` **8 passed** (its revoked-pill pin was correctly re-scoped to the revoked table in this phase)

**Completion criteria:** 1 ✓ split+search (E2E 1–2) · 2 ✓ required name (E2E 3 + source pin) · 3 ✓ rotation end-to-end, old token refused at gate (E2E 4 + API 404/409 pinned) · 4 ✓ A4 holds (list carries no plaintext/hashes) · 5 ✓ suite/coverage/lint green · 6 ✓ E2E + regressions green in isolation · 7 commit left to the harness per executor rules (all changes uncommitted in the working tree)

**Deviations:** none. Next pending phase: `98_sync_summary_visibility`.
2026-09-12 15:16:02 -04:00
ducoterra 9188be259b phase: 93_theme_semantic_completion
Build and Push Containers / build-and-push-app (push) Successful in 1m56s
Build and Push Containers / build-and-push-db (push) Successful in 11s
All verification is complete. Final report:

**Phase 93 — Theme semantic completion: FINAL VERIFICATION PASS — ALL GREEN**

- Verified full implementation in tree: migration `0016` (8 nullable semantic columns, applied at head), 17-var `BUILTIN_COLORS`/`COLOR_FIELDS`/`effective_settings`, API validation, `#view-theme` State-colors fieldset (17 pickers), `theme.js` FIELDS/PAIRS (5→8), `.page-head` surface panel (6 shell views + doc-edit + shared.html; login card / document sticky header audited as already-surfaced), mock_llm `content: None` fix
- Fixed 2 pre-existing defects (both fail identically on baseline `d4f38ad`, proven via worktree A/B): `test_nav_rename_sources` — expected nav tail missing the phase-91 "Theme" link; `test_stale_ui_copy` — now truncates `saved_chats` before/after (house `test_suggestion_chips` pattern) so the seed-chip contract is deterministic on the shared dev DB (owner's 22 saved chats triggered phase-80 last-3-questions)
- Tests: `uv run pytest --cov=app --cov-report=term-missing` → **1868 passed, app/ 99%** (>90% ✓); `uv run ruff check .` → clean; `uv run pyright` → **0 errors**
- E2E: dedicated `uv run pytest tests/e2e/test_theme_semantic_completion.py -v --no-cov` → **8/8 in isolation** (all-gray 17-color theme: zero residual color on saved-result/Stale/Revoked/Local/tool-call elements, text labels intact, gray heads non-transparent, pre-paint tag, Reset → byte-identical no-tag); 15 theme/header/nav/responsive suites green in isolation; full 85-file combined run: only the 2 fixed pre-existing failures + 1 combined-run artifact (`test_sync_upload_progress`, green in isolation)
- Completion criteria: (1) monochrome E2E ✓ (2) default byte-identical, no `#bor-theme` tag ✓ (3) all page heads on solid surface ✓ (4) suite/coverage/lint/E2E green ✓ (5) phases 01–92 no behavior change ✓ (6) commit left to harness per protocol
- Notable: cleaned stray uvicorn leftovers from prior implementation pass (owner's `--reload` dev server untouched); no deviations from the phase design
- Next pending phase: `94_ls_tree_drilldown`
2026-09-10 16:43:08 -04:00
ducoterra df91c6316c phase: 92_theme_save_and_coverage
Build and Push Containers / build-and-push-app (push) Successful in 1m47s
Build and Push Containers / build-and-push-db (push) Successful in 11s
**Phase 92 final verification pass — all green.** This pass re-verified the completed tasks (all 5 task files already in `complete/`) against every completion criterion; no defects found, nothing to fix.

- Verified: 9th identity var `grid_line` end-to-end (migration `0015` at head, model/`theming.py`/schemas/API, 422 + built-in→NULL tests present); `styles.css` zero hardcoded literals outside `:root` + derived `--brand-*` vars; 9th picker in theme form; wordmark themed; `theme.js` save/reset/re-show/mount live-sync; dedicated E2E suite + phase-91 suite updated.
- `uv run pytest --cov=app --cov-report=term-missing` → **1845 passed, exit 0, TOTAL 99%** (>90%)
- `uv run ruff check .` → clean; `uv run pyright` → 0 errors, 0 warnings
- `uv run pytest tests/e2e/test_theme_save_and_coverage.py -v --no-cov` → **3 passed** (save-live, reset-live, whole-site)
- `uv run pytest tests/e2e/test_admin_theme_tab.py -v --no-cov` → **5 passed**
- Criteria: (1) Save/Reset repaint open page, no nav, SPA-nav survives, pre-paint intact ✅; (2) both `rg` gates green (only `:root` + documented `#fff` Stop label; zero SVG hex attrs), grid/selection/hovers/wash/wordmark E2E-proven ✅; (3) no-op contract live-checked: row-less `/` = no tag + exact A1 CSP, grid-only row = 9-var tag in `COLOR_FIELDS` order + sha256 CSP, with-row ≡ row-less bytes ✅; (4) full suite/coverage/lint/both E2E ✅; (5) commit left to the harness per instructions.
- Deviations (previously made, probe-verified, kept): live repaint uses CSSOM `<html>` overrides because Chromium blocks `<style>` textContent mutations under the locked sha256-only CSP (tag text still mirrors the next load; `<html>` style exact-saved after Save, empty after Reset); wordmark themed via 3 `.brand-mark` CSS rules instead of inline styles (task 03's inline attrs were CSP-blocked — fixed during task 04).
- Next pending phase: none — `todo/` contains only `92_theme_save_and_coverage`.
2026-09-10 00:23:08 -04:00
ducoterra d22d260b8b phase: 91_admin_theme_tab
Build and Push Containers / build-and-push-app (push) Successful in 5m43s
Build and Push Containers / build-and-push-db (push) Successful in 12s
All verification is complete — this pass needed no code changes. Final report:

**Phase 91 — Admin Theme tab: final verification pass (all 6 tasks already in `complete/`)**

- Verified pre-paint theming end-to-end: `ui_settings` store + resolver, admin `GET/PUT /api/ui-settings`, `CachingMiddleware` inline-`<style id="bor-theme">` injection before `</head>` (incl. `/shared/<token>` prefix branch, unit-pinned), CSP sha256 exemption for the inline tag, Theme tab shell + `theme.js` editor, CSS-file theming fully retired.
- No defects found; zero changes made — working tree left exactly as the task executors left it.
- Tests: `uv run pytest --cov=app` → 1841 passed, 0 failed (TOTAL coverage **99%**; theming/ui_settings/caching all 100%); `uv run pytest tests/e2e/test_admin_theme_tab.py -v --no-cov` → **5 passed** in isolation.
- Lint/types: `uv run ruff check .` → All checks passed; `uv run pyright` → 0 errors, 0 warnings.
- Criteria: (1) unset deployment byte-identical, no `#bor-theme` anywhere — ✓ (unit no-op test + E2E reset byte-compare); `rg "BOR_THEME|themes/"` → single hit is the permitted doc-history comment in `frontend/index.html`. (2) admin-only gate + 403s for anonymous and token users — ✓ (E2E test 3). (3) saved theme inline before `</head>` on every page incl. `/shared/<token>`, computed `--brand` on first paint for admin + anonymous — ✓ (E2E test 2 + unit). (4) reset → byte-identical; 5 contrast pairs warn <4.5:1, non-blocking — ✓ (E2E tests 4–5). (5) suite green, >90% coverage, lint clean — ✓. (6) commit deferred to harness per rules.
- Notable: `.agents/PLAN.md` is absent from the repo — the phase overview's Design section was used as the binding spec; no deviation resulted.
- Next pending phase: **none** — 91 is the last phase in `todo/`.
2026-09-09 17:22:24 -04:00
ducoterra f4150421bb phase: 84_docs_push_error_sanitization
**Phase 84 — final verification pass: all green, no defects found**

- Verified implementation: `app/core/errors.py` (verbatim lift of sync masker), `app/api/sync.py` alias import, docs-push 502 `detail=sanitize_error(str(exc))`, all five `llm.py` error sites sanitized; new/extended test pins in place
- Tests: `uv run pytest` → **1714 passed, 0 failed**; targeted pins (new unit ×2 + integration ×1, existing 502 pin) → 13 passed; sync/git-sources regression → 67 passed
- Coverage: `uv run pytest --cov=app --cov-report=term-missing` → **99%** (`app/core/errors.py` 100%, `app/rag/llm.py` 100%) — >90% met
- E2E isolation: `uv run pytest tests/e2e/test_smoke.py -v --no-cov` → **3 passed**
- Lint/types: `uv run ruff check .` → clean; `uv run pyright` → **0 errors**
- Criteria: 502 masks `*****@`/never token + row untouched ✅; LLM base-URL masked, credential-free strings byte-identical ✅; `_CREDS_RE` only in `app/core/errors.py` (working-tree grep) ✅; full gate green ✅; `git diff --stat` limited to the 4 app files + 2 modified test files + 3 phase task files (untracked: new module, new unit test, complete/ dir, reports, audit plan) ✅
- Commit/phase move left to the harness per instructions (task files already in `complete/`)
- No deviations; nothing to fix
- Next pending phase: **85_mobile_menu_gate_overlap**
2026-09-08 01:11:45 -04:00
ducoterra e29d68d9f0 phase: 82_security_headers
All completion criteria verified green — no defects found, nothing to fix. Final report:

**Phase 82 (security headers) — final verification pass: all green**

- Verified prior-run implementation: `app/core/security_headers.py` (pure-ASGI, header-only, exact A1 CSP), registration in `app/main.py` after `configure_caching` (outermost), unit/integration/E2E suites.
- Deviation confirmed sound: `data:`-URI favicon (blocked by locked CSP) → static `frontend/assets/favicon.svg` in 5 templates + Containerfile `cp`; SVG element byte-identical to the old data-URI (verified programmatically); serves 200 with all three headers.
- Curl check (server booted like e2e conftest, log: `/tmp/curl_security_headers_final.log`): `/`, `/api/health`, `/assets/styles.css`, `/nope` (404) → all three headers, CSP exactly `default-src 'self'; base-uri 'none'; frame-ancestors 'none'`.
- `uv run pytest tests/unit/test_security_headers.py tests/integration/test_security_headers.py -v --no-cov` → 13 passed (incl. SSE byte-identity pin).
- `uv run pytest tests/e2e/test_security_headers.py -v --no-cov` (isolated) → 2 passed (headers + zero CSP violations + painted page).
- SSE tripwire `uv run pytest tests/e2e/test_chat_rag.py -v --no-cov` → 3 passed.
- `uv run pytest --cov=app --cov-report=term-missing` → 1665 passed, app/ 99% (>90%); `uv run ruff check . && uv run pyright` → clean (0 errors).
- `git diff --stat` limited to phase-82 files + the two documented deviations (favicon set, `tests/unit/__init__.py`); no `pyproject.toml`/`uv.lock`/JS diffs.
- Commit + phase-dir move left to the harness per pipeline rules (not executed by me).

Next pending phase: `83_chat_save_payload_limits`.
2026-09-07 23:54:41 -04:00
ducoterra 42a4222949 phase: 81_login_rate_limit
All gates verified. The phase is complete — everything was already implemented by prior task runs; this pass verified each completion criterion end-to-end and found no defects.

**Phase 81 final verification report** (tasks 01–03 all present in `complete/`; no code changes needed this pass)

- Verified: `app/core/rate_limit.py` (stdlib sliding window, fail-open) + both login routes' 429 pre-check/record/reset wiring + all unit/integration pins present (11th-429, blocked-success-still-429, clean-counter reset, shared counter, autouse `clean_rate_limit` fixture documented).
- Live check (task 03): dev server + 11 rapid wrong logins → `401 ×10, 429`; 429 body carries `retry-after: 900` + generic detail; server restarted (per-process counter cleared by design).
- `uv run pytest tests/unit/test_rate_limit.py -v --no-cov` → 10 passed
- `uv run pytest --cov=app --cov-report=term-missing` → 1652 passed, **TOTAL 99%** (>90%; rate_limit.py 100%, auth.py 100%)
- `uv run pytest tests/e2e/test_smoke.py -v --no-cov` (isolation) → 3 passed
- `uv run ruff check . && uv run pyright` → All checks passed / 0 errors, 0 warnings
- Completion criteria: all met, except commit + phase-dir move — per harness rules I left all changes uncommitted in the working tree (harness commits atomically and moves the phase).
- Diff scope: exactly `app/core/rate_limit.py`, `app/api/auth.py`, `tests/unit/test_rate_limit.py`, `tests/integration/test_auth_api.py` + phase files; `pyproject.toml` / `uv.lock` / `frontend/` untouched.
- Deviations: none in code; commit/move deferred to harness as instructed.
- Next pending phase: `82_security_headers`.
2026-09-07 23:08:46 -04:00
ducoterra 7fce6572d0 feat: phases 77–80 — navbar view refresh, static background, API tokens, history suggestion chips
Build and Push Containers / build-and-push-app (push) Successful in 1m45s
Build and Push Containers / build-and-push-db (push) Successful in 13s
Single consolidated commit for four completed, validated phases (77, 78,
79, 80). The pipeline run left all work uncommitted because the harness
commits only with PHASE_COMMIT=1 while child executors are forbidden from
committing; the phases themselves all passed validation and moved to
.agents/phases/complete/.

Phase 77 — navbar view refresh
- router.js dispatches bor:view-refresh on re-show / active re-click /
  popstate (gated on wasMounted; first show and boot exempt)
- History / RAG / Sources / Tuning re-fetch on refresh (admin branch);
  Chat deliberately excluded (stream survival)
- History "Refresh" button (admin-only, in-flight disable + status line)
- New story suite tests/e2e/test_navbar_refresh.py (7 tests)

Phase 78 — static background
- Removed the animated glow layers; static 44px grid over the flat --bg
  canvas; default and reduced-motion renders byte-identical
- Updated background/theme E2E suites; removed bg-glow test pins

Phase 79 — API tokens
- api_tokens model + migration 0012; hash-only token service
- Admin tokens API + Tokens admin view; POST /api/token-auth;
  live-revoking require_user on chat / suggestions / document content
- Frontend token gate with localStorage cache; anonymous E2E suites
  migrated to token login
- New story suite tests/e2e/test_api_tokens.py (9 tests)

Phase 80 — history suggestion chips
- last_questions() endpoint with SEED fallback; startNewChat() refetch
- Seed-semantics docs (config.py, .env.example, README)
- Integration state matrix + E2E suite rewritten to the 4 chip states

Also included: phase-76 report artifacts and the repo restore-test-db
skill (previously untracked), scripts/* ruff fixes from phase 77.

Final gate state (phase 80 final pass, covers everything above):
- uv run pytest --cov=app → 1637 passed, 0 failed, app/ coverage 99%
- uv run ruff check . && uv run pyright → clean, 0 errors
- Per-phase story E2E suites green in isolation
2026-09-07 12:39:01 -04:00
ducoterra 725af9fac1 feat(docs): save chat answers as docs — edit screen, commit + push to the .env docs branch 2026-09-01 03:52:03 -04:00
ducoterra c564e317ed fix(web): never 304 a rewritten page — pages drop conditional validators, assets keep them 2026-08-31 01:35:28 -04:00
ducoterra 114b115034 feat(chat): share a chat by link — anonymous read-only /shared/<token> page, share/unshare 2026-08-30 01:34:44 -04:00
ducoterra ece93a7c8f feat(chat): save and view chat history — admin-only saved_chats, History page, open-a-chat return 2026-08-29 21:22:25 -04:00
ducoterra 1925bb66a8 feat(sources): admin page to add and remove git sources (TODO.md L4) 2026-08-26 18:42:28 -04:00
ducoterra 8fabb7efda perf(ui): cache busting — HTML no-cache + versioned asset URLs (?v=) with immutable 1y asset caching
Phase 33 (story: .agent/user_stories/cache-busting.md).

- app/core/caching.py: asset_version() — git short SHA (a commit is a
  deploy), stable content-hash fallback for non-git checkouts, "dev"
  for a missing static dir; computed once per process. CachingMiddleware
  — the five HTML pages revalidate (no-cache) with ?v=<token> asset refs
  rewritten in flight; /assets/* is public, max-age=31536000, immutable;
  everything else (all /api/*, the SSE chat stream in particular) passes
  through byte-identical.
- tests/e2e/test_cache_busting.py: fresh-Chromium wire assertions —
  document no-cache, versioned CSS/JS request URLs sharing one token,
  immutable asset headers, /api/health baseline headers, SSE chat to
  done (mock LLM).
- README 'Caching / deploys' section + story file.

Also fixed two prod-image defects surfaced by this phase's podman smoke
(the full app would not boot):
- Containerfile: ship the scripts/ package — app/api/sync.py (phase 32)
  imports scripts.git_sync / scripts.import_docs at module level, so the
  container crashed on boot (ModuleNotFoundError: No module named
  'scripts').
- compose.yaml: pass BOR_ADMIN_PASSWORD / BOR_SESSION_SECRET through to
  the app service (:- defaults keep 'podman compose up -d db' working;
  the app's own fail-loud gate still names missing admin auth).

Smoke: podman compose --profile prod up -d on a fresh image + a fresh
Chromium profile — /, /sources.html and /login.html all served
Cache-Control: no-cache; all 8 asset requests versioned with one shared
token (content-hash fallback inside the image — no .git there);
/assets/* immutable for a year.
2026-08-25 22:42:10 -04:00
ducoterra cbc263a4b2 feat(auth): single-admin password login (signed cookie) — gate tuning + Sources catalog, keep chat and document viewer public 2026-08-23 19:58:39 -04:00
ducoterra 022da8e2bc feat: scaffold Brain of Reese — FastAPI RAG chat over Postgres 17 + pgvector
Foundation (phase 01, verified):
- FastAPI app: /api/health, /api/suggestions, /api/chat (placeholder),
  static frontend served locally (no CDN)
- Postgres 17 + pgvector via db/Containerfile + compose.yaml
  (podman compose up -d db), Alembic initial migration (documents,
  chunks with vector(768), query_log)
- LLM client targeting https://aipi.reeseapps.com/v1 (turbo/embed);
  scripts/llm_probe.py verified models + 768-dim embeddings live
- Conditional debugpy: imported only when DEBUGPY=1 (attach on demand,
  :5678); logging config for clean single-line logs
- Frontend shell: mobile-first chat + Sources pages, tokens, a11y baselines
- Tests: 24 unit+integration (99% coverage on app/), ruff + pyright clean,
  Playwright smoke E2E (3 tests) against a deterministic mock LLM
- Planning: .agent/PLAN.md (architecture + LOCKED decisions), AGENTS.md,
  6 user stories, 7 phase files (one story / one phase / one Playwright
  suite each)
2026-08-21 13:42:21 -04:00