brain-of-reese

Author	SHA1	Message	Date
ducoterra	eebc824636	phase: 162_search_recall_small_sources Build and Push Containers / build-and-push-app (push) Successful in 1m50s Details Build and Push Containers / build-and-push-db (push) Successful in 14s Details Phase 162 — final verification pass (all tasks already complete; verified + docs pass) - Verified: `_fold` (NFKD+casefold, stdlib) inside `_normalize_name` — `BESTÅ`→`besta` question side, `BÅsta.md`→`basta` path side; A2 match classes/ranking/caps/bonus untouched; FTS/cosine/A8 untouched. - Verified: `grep_document` folds both sides via the imported `_fold` (no second copy); regex-teaching lines byte-identical; 3 copy sites updated. - Verified: `regenerate_overview` appends the deterministic `Sources: <name> (<k> doc\|docs)` tail (happy path only; zero-doc + `LLMError` rows byte-identical; `build_overview_prompt`/`load_kb_overview`/`build_kb_section` untouched). - Verified: `TOOLS_SECTION` grep sentence updated + D4 search-discipline sentence present verbatim, immediately after the grep sentence; `PERSONA`/LOW pins byte-identical (`test_prompt_lock.py`). - Measured evidence (in `.agents/reports/162_…/task04_prefix_evidence_and_battery.md` + re-measured every run by `test_under_rank_is_measured_not_assumed`): pre-fix tokens `['build','best']` → IKEA doc rank 6 (outside top-5); post-fix `['build','besta']` → suggested #1, cosine unchanged 0.382. - `uv run pytest tests/e2e/test_search_recall_small_sources.py -v --no-cov` → 7 passed (isolated); neighbours `test_kb_overview{,_freshness} test_name_signal_read_chips test_grep_regex_teaching test_harness_aligned_tools test_agent_document_tools test_tool_call_compact` → 24 passed. - `uv run pytest --cov=app --cov-report=term-missing` → 3756 passed, app coverage 99% (>90%). - `uv run ruff check .` → All checks passed; `uv run pyright` → 0 errors. - Completion criteria: fold both ways ✅ · `Sources:` tail ✅ · TOOLS_SECTION + D4 verbatim + re-cut pins ✅ · E2E green/battery recorded/full suite/coverage/lint ✅ · docs pass ✅ · commit + dir move = harness. - Battery: 5 phase-119 questions byte-identical to the phase-119 record (GATE PASS); the 2 Besta questions skipped loudly — verified the 2026-09-05 replica dump has zero `ikea` matches (`grep -c -i ikea data/bor_live_kb_replica.dump.sql` = 0); rank gate stays with the owner's live KB. - Docs fixed: README — overview-tail doc + `BOR_KB_OVERVIEW_MAX_CHARS` tail-cut constraint, the phase-162 search-discipline paragraph, per-phase (not per-story) E2E wording, new "Retrieval regression battery" section; AGENTS.md — rule 4 per-phase wording + battery command in Quick reference. (The overview's expected "AGENTS.md §6 tool table" does not exist in this repo — the grep contract line lives in README's tool table, already updated.) - Deviations (recorded, not assumed): `_fold` adds `casefold` (required for the pinned `ß → ss`); `①` NFKD-decomposes to `1` (the overview's parenthetical was wrong) and is excluded by `NAME_TOKEN_MIN_LEN`; pre-fix evidence lives in the reports dir because task files are read-only for this pass. - Owner follow-up A6 (runtime, not code): add the Tuning-tab steering note "IKEA's BESTÅ assembly PDF is a live source — search it as `BESTÅ` or `AA-1272068`". - Next pending phase: none — 162 is the only entry in `todo/` (harness moves it to `complete/`).	2026-10-07 01:42:01 -04:00
ducoterra	690fd98036	fix(rag): stop the per-run blocks from folding — the container is the one disclosure Build and Push Containers / build-and-push-app (push) Successful in 1m43s Details Build and Push Containers / build-and-push-db (push) Successful in 15s Details The owner refinement (2026-10-06): the per-run thinking and tool-call blocks inside the Reasoning bubble were individually collapsible details elements — a fold inside the fold. A tool frame closed the previous thinking block, so the visible thinking vanished mid-turn; and the pinned-tail follow died on the append of every run after the first (the pin was captured AFTER the new block's height growth contaminated the 32px reading). - app.js: the in-container runs are now plain divs — createThinkingRunEl (div.thinking + static .thinking-summary label + .thinking-text) and createToolRunEl (div.tool-calls-disclosure + static .tool-calls-summary label + the .tool-calls list); they never open or fold (the container is the ONE open/fold control, open through the turn, folded at settle — unchanged); the pin capture moves BEFORE ensureThinkingRun/ensureToolRun append (plus the first-frame edge: no container yet -> always pinned); closeCurrentRun just ends the run; closeAllRuns stays the defensive legacy guard; restoreTimeline/addSegments (shared.js) use the div builders; the legacy no-segments restore path keeps the old details-based blocks byte-identical - styles.css: the in-container runs are distinct by label + rail (brand-ink Thinking label on a brand-soft rail; accent-ink Tool call(s) (N) label on a neutral rail); the interactive treatment (cursor + chevron) is scoped to the legacy <summary>; the inner windows stay disabled (the container's .reasoning-body is the ONE live scroll surface) - unit + E2E: the D5-refinement contract is pinned — one details.reasoning disclosure, per-run blocks as plain divs, zero nested <details> inside the container, the container as the only open/fold control, the .reasoning-body window auto-follows the tail while streaming unit+integration 3738 passed (coverage 99%), ruff + pyright clean, all five affected E2E suites pass in isolation (reasoning_bubble 6, thinking_timeline 6, thinking_display 5, thinking_scroll 8, tool_call_compact 4), verified live: the follow holds through a long thinking stream, the tool-frame transition, and the second thinking run; restore renders the div structure without client-side errors LLM-Generated: true	2026-10-06 14:44:41 -04:00
ducoterra	051f62deb7	phase: 161_reasoning_bubble Build and Push Containers / build-and-push-app (push) Successful in 1m55s Details Build and Push Containers / build-and-push-db (push) Successful in 14s Details All gates verified. Final check — AGENTS.md rules against the project (commands, gates, protocols) — the quick-reference commands all exist and the rules (PLAN §2/§7/§9 references, phase protocol, No CDN, Debugpy, git gates) accurately describe the project; the reasoning bubble is a pure UI change with no new commands or env vars, so no AGENTS.md change is needed. Verification complete — full results: - Verified (implemented by prior task passes, all in working tree): `createReasoningWrap`/`ensureReasoningWrap` live container (D1), `settleReasoning` fold at the 3 settle sites + not at delta (D2), 320px `.reasoning-body` window + pinned-tail follow (D3), zero persistence change (D4), collapsed restore + shared-page parity with D6 step counts, `styles.css` family treatment + reduced-motion still, mock `REASONING_MIDROUND_TRIGGER` flow, 6-test story suite, phase-158 pin updates - Full suite: `uv run pytest` → 3738 passed, 0 failed · `uv run pytest --cov=app --cov-report=term-missing` → TOTAL 99% (>90%) · `uv run ruff check .` → all checks passed · `uv run pyright` → 0 errors, 0 warnings - E2E in isolation (DB up; port-8123 collision with an unrelated `undercooked` service → `E2E_APP_PORT=8125`/`E2E_MOCK_PORT=8902`, no live change made): `test_reasoning_bubble.py` 6/6 · `test_thinking_timeline.py` ✓ · `test_thinking_display.py` ✓ · `test_tool_call_compact.py` ✓ · `test_big_read_progress.py` ✓ · `test_turn_progress_loader.py` ✓ · `test_share_chat.py` ✓ · `test_chat_persistence.py` ✓ · `test_smoke.py` ✓ (all exit 0, zero failures) - Completion criteria: all 9 checked against the code + test outcomes — container open/live/nested ✓, stays open past mid-round delta ✓, folds at done ✓, restore + shared collapsed with "3 steps" ✓, plain turn = no container ✓, regression suites green ✓, suite/coverage/lint green ✓, diff scope limited to `frontend/assets/{app.js,shared.js,styles.css}` + `tests/` + `README.md` + phase files (no `app/` — D4) ✓ - Documentation: README.md "Thinking" section names the Reasoning bubble accurately (320px window, open-until-settle incl. mid-round deltas, "N steps", byte-identical no-container, collapsed on restore/shared) — verified consistent, no changes needed; AGENTS.md — verified consistent, no changes needed; all `.env.example` vars documented - Decisions: commit + phase-dir move left to the harness (per pass rules — no git index/history commands executed); `undercooked` dev server on port 8123 untouched, E2E used the env port overrides - Next pending phase: none — `161_reasoning_bubble` is the last in `todo/`	2026-10-06 06:36:09 -04:00
ducoterra	8172956c15	phase: 160_tool_budget_telemetry Build and Push Containers / build-and-push-app (push) Successful in 2m27s Details Build and Push Containers / build-and-push-db (push) Failing after 2m8s Details All green. Final report: Phase 160 completion pass — verified (final verification; all 5 tasks already in `complete/`) - Verified, no code defects found: budget trailers (`TOOL_BUDGET_REMAINING/LAST/SPENT`), cap-path rejection + `ROUND_CAP_FALLBACK_ANSWER` + `ROUND_CAP_WRAPUP_INSTRUCTION`, `done.budget_exhausted` (ABSENT-when-false), `rounds=/cap_hit=` log fields, `agent_max_rounds=10` default, frontend Continue button + restore + shared-page exclusion, mock markers. - Tests/lint: `uv run pytest` 153/153 green (EXIT 0); `uv run pytest --cov=app --cov-report=term-missing` TOTAL 99% (>90%); `uv run ruff check .` clean; `uv run pyright` 0 errors/0 warnings. - Criteria: ① decreasing trailer pinned by unit tests (9→…→spent) ✅ ② cap path ends readable, no tool lines after cap (E2E) ✅ ③ `budget_exhausted` true-only-on-cap, absent otherwise (integration) ✅ ④ Continue button → one fresh `continue` turn, fresh budget, record intact (E2E) ✅ ⑤ flag survives refresh; shared chat never renders it (`shared.js` has no `budget_exhausted` path) ✅ ⑥ `max_rounds=0` byte-identical single `tools=None` request; default still 10 ✅ ⑦ full suite/coverage/lint green ✅ ⑧ `test_tool_budget_telemetry.py` 7/7 in isolation; all 6 regression E2E suites green in isolation ✅ ⑨ commit + phase move = harness (I make no git history/index changes). - Docs: README.md — fixed: the "Continue researching" button and cap behavior were undocumented (added a Chat-section paragraph + an Agent-tools-section paragraph, incl. the phase-71 recorded-revision note); env-var table, commands, and architecture all verified consistent otherwise. AGENTS.md — verified consistent, no changes needed. - Decisions: no code changes required — phase was fully implemented; only README docs added. No live-infrastructure touched. - Next pending phase: `161_reasoning_bubble`.	2026-10-06 01:42:44 -04:00
ducoterra	cb8767512a	phase: 159_edit_and_resend_message Build and Push Containers / build-and-push-app (push) Successful in 1m39s Details Build and Push Containers / build-and-push-db (push) Successful in 15s Details All completion criteria verified. Final report: Phase 159 — Edit the last question and re-ask it: VERIFIED COMPLETE (all 4 tasks already in `complete/`; this pass verified end-to-end) Verified (implementation landed + tests green): - `app.js`: `EDIT_ICON`, `lastUserWrap`, `appendEditButton`/`markLastEditable` (single-target discipline, in-flight guard), `openEditor` (labelled textarea, `maxlength=4000`, Escape/Ctrl+⌘+Enter, empty guard), save path: replace → splice tail → DOM removal → `lastBrainWrap=null` → `saveConversation`+`persistConversation` → `runTurn(text,{reask:true})` — matches README exactly - `styles.css`: `.edit-btn`/`.edit-form`/`.edit-error`/`.is-editing` + mobile 44px; unit pins 40, E2E 7, integration `test_chats_api.py` extended Test/lint results (all green): - `uv run pytest` — 3,661 tests, exit 0 - `uv run pytest --cov=app --cov-report=term-missing` — TOTAL 99% (>90%) - `uv run ruff check . && uv run pyright` — all checks passed; 0 errors - `uv run pytest tests/e2e/test_edit_and_resend.py -v --no-cov` (DB up) — 7/7 passed - Regressions in isolation: `test_retry_answer.py` 4/4, `test_failed_turn_retry.py` 4/4, `test_chat_persistence.py` 4/4 Completion criteria: all 7 ✓ — Edit on last bubble + prefill + Escape/Cancel restore (E2E #3); replace+truncate+re-ask with no duplicated question (E2E #1); refresh survival (E2E #4); failed/“question too long” turn editable + trim re-asks (E2E #5); earlier bubbles un-editable + byte-identical Retry/Stop/persistence (E2E #2 + regressions + unit pins); suite/coverage/lint ✓; E2E + regressions isolated ✓. Commit + phase-dir move: harness's job (no git ops by me, per protocol). Documentation: README.md — full review; phase 159 section cross-checked against `app.js` source (cap, keys, truncate, image survival) — consistent, no changes needed; all 30 `.env.example` vars documented. AGENTS.md — full review; all rules/quick-ref commands valid — verified consistent, no changes needed. Notable: none — no defects found in prior work; no live-infrastructure changes required. Next pending phase: `160_tool_budget_telemetry`	2026-10-05 19:07:33 -04:00
ducoterra	31bd903a93	phase: 158_thinking_timeline Build and Push Containers / build-and-push-app (push) Successful in 8m38s Details Build and Push Containers / build-and-push-db (push) Successful in 32s Details All verification complete. Every gate is green and the docs check out. Final report: ## Phase 158 final verification pass — COMPLETE Verified (all tasks pre-completed; this pass re-ran the full gate): - Unit + integration: `uv run pytest --cov=app --cov-report=term-missing` → 3618 passed, 99% coverage on `app/` (>90% gate) - Phase E2E in isolation: `uv run pytest tests/e2e/test_thinking_timeline.py -v --no-cov` → 6/6 passed (order pin, fold-at-rest, live-open, restore+`segments` array, shared page, no-thinking single disclosure) - Regression E2E, each in isolation: `test_thinking_display` 5✓, `test_tool_call_compact` 4✓, `test_turn_progress_loader` 3✓ (per-run pin updated), `test_big_read_progress` 4✓, `test_agent_document_tools` 4✓, `test_share_chat` 4✓, `test_chat_persistence` 4✓, `test_smoke` 3✓ - Lint/types: `uv run ruff check . && uv run pyright` → clean (0 errors) Completion criteria: all 9 met — timeline E2E pins ✓, restore/shared `segments` ✓, no-thinking single-disclosure + the three UNCHANGED regression suites green ✓, pre-phase byte-identical round-trip (integration pin: key absent, never null; >50 / >32 000 / empty text / unknown kind all 422) ✓, full suite + coverage + E2E + lint ✓, `git diff --stat` footprint limited to `app/schemas.py`, `frontend/assets/{app,shared}.js`, `tests/`, README, phase files (a pre-existing owner `TODO.md` edit is out of scope, not staged by the phase commit) ✓, D15→per-run supersession recorded in the updated pin ✓. (Commit + phase move are the harness's job; task dirs already in `complete/`.) Documentation: README.md — Thinking section correctly describes the phase-158 timeline; config reference matches `.env.example` exactly; page table matches registered routes; no stale single-block wording. AGENTS.md — rules and quick-reference commands all accurate. Verified consistent — no changes needed. Decisions/deviations: none. `test_tool_call_compact.py` carries a one-line docstring-only update (referenced the removed `closeToolCalls`); its test logic is byte-identical to the phase-117 contract and green. Next pending phase: none — `todo/` contains only 158.	2026-10-05 02:52:55 -04:00
ducoterra	3f752fb77f	phase: 157_chat_chip_cap Build and Push Containers / build-and-push-app (push) Successful in 2m19s Details Build and Push Containers / build-and-push-db (push) Successful in 11s Details All verification is green. Final report: Phase 157 — final verification pass (all 3 tasks already complete in `complete/`) - Verified the implemented work matches the design: `CHIP_CAP = 90` constant + display-only cap in `renderChips` (`slice(0,90).trimEnd() + "…"`), `title`/`aria-label`/click payload byte-unchanged; unit pins (89/90/91 letter & space, full-text invariant, short-string guard, Maybe-try single-path guard); phase-104 E2E updated to the cap contract - Full suite `uv run pytest --cov=app --cov-report=term-missing`: 3578 passed, app/ coverage 99% (>90% ✓) - `uv run ruff check .` clean; `uv run pyright`: 0 errors - Dedicated E2E `uv run pytest tests/e2e/test_chat_chip_cap.py -v --no-cov`: 4/4 passed in isolation (DB up) - Cross-phase regression: phase-104 E2E 6/6, phase 05/80/103 chip suite 8/8 (seed chips <90 chars — cap is a no-op, assertions hold) - Criteria: ≤91-char capped display ✓ (byte-for-byte pin) · click submits FULL 120-char question (user bubble) ✓ · `title` + clipped-case `aria-label` carry full text ✓ (375px viewport) · <90-char byte-identical ✓ (unit + live DOM) · commit: deferred to the harness (per harness protocol, overrides AGENTS.md rule 8 for this pass) - Documentation: README.md reviewed in full — every `.env.example` var documented, all referenced scripts/pages/commands verified against the tree, the phase's chip-cap note is in the Chat section; AGENTS.md verified (commands, test files, layout-rule citations — phase 157 adds no new layout principle) → verified consistent, no changes needed - No live-infrastructure changes were required or made - Next pending phase: 158_thinking_timeline	2026-10-04 22:18:31 -04:00
ducoterra	742eef955b	phase: 155_folder_summary_voice Build and Push Containers / build-and-push-app (push) Successful in 2m25s Details Build and Push Containers / build-and-push-db (push) Successful in 13s Details All verification is complete — the whole project is 100% green. Final report: Phase 155 final verification pass — complete. Verified (all tasks 01–04 done in `complete/`): - Instruction nudge in `app/rag/folder_summaries.py` (forbidden openers as the pin, 4 constraints preserved, docstring cites the phase) - `scripts/regen_folder_summaries.py` (import_docs idiom, full mode, cron-safe summary line, fail-loud boot) - Unit pins, integration suite, mock voice update, dedicated E2E suite Test / lint / coverage: - `uv run pytest --cov=app -q` → 100% passed (exit 0, zero failures); coverage 99% on `app/` (>90% ✓) - `uv run pytest tests/e2e/test_folder_summary_voice.py -v --no-cov` → 3 passed in isolation - `uv run ruff check .` → clean; `uv run pyright` → 0 errors, 0 warnings Completion criteria: 1. Marker + header prefix byte-identical — ✅ (git vs HEAD + unit pins verbatim, green) 2. Regen script full regeneration — ✅ (live smoke: exit 0, `folders=… limit=7` summary line; misconfig boot → named stderr, exit 1; `updated_at`-advance/no-prune/canned-text semantics proven by the integration suite, green) 3. Sync path untouched — ✅ (0 diffs to `app/api/sync.py` / `app/rag/importer.py`; phase-127 pins green) 4. E2E stored + rendered without forbidden openers — ✅ (3/3, exact canned-string assertions + phase-127 regression guard) 5. Full suite green, E2E isolated green, ruff + pyright clean, coverage >90% — ✅ 6. Atomic commit — deferred to the harness (working tree left intact per protocol) Documentation: README.md and AGENTS.md reviewed in full — verified consistent, no changes needed (README already documents the new script in the update workflow; all `.env.example` vars documented; pages table matches routes; 17 colors = 9+8; no stale mock-voice references). Decisions: No live-infrastructure changes (dev-DB read + a 0-row script smoke only). The `TODO.md` working-tree edit is the owner's own, left untouched. Next pending phase: `156_table_ux_polish`.	2026-10-04 16:32:50 -04:00
ducoterra	c275735db4	phase: 154_sync_status_freshness Build and Push Containers / build-and-push-app (push) Successful in 2m26s Details Build and Push Containers / build-and-push-db (push) Successful in 16s Details All 4 task files exist in `complete/`, and only `00_phase.md` remains in `todo/`. This is the final verification pass. I'll read through the task files and check the current state of the code.	2026-10-04 14:24:33 -04:00
ducoterra	966c4b0540	phase: 153_document_viewer_context Build and Push Containers / build-and-push-app (push) Successful in 2m45s Details Build and Push Containers / build-and-push-db (push) Successful in 19s Details That last `--co` (collect-only) run was my probe mistake — it shows 34% because no tests execute under collect-only. The valid coverage run was the real gate command executed earlier: `uv run pytest --cov=app --cov-report=term-missing` → TOTAL 99% (exit 0, all 3544 tests executed). All gates are verified. ## Phase 153 — final verification pass report Verified (all tasks 01–04 complete in `complete/`): - Modal `fullPageUrl(source, path, back = null)` + `openDocumentModal(…, back = null)` with module-level `currentBack`; 5 chat call sites pass `"/"`, sources.js call site unchanged (byte-identical Sources path); `documentUrl` comment now true - Copy-path control (shared `renderDocument` core, icon+text, text = accessible name) on both surfaces; per-page clipboard helpers with the fallback-field + status-line contract; `#doc-copy-announcer` live region; styles + 44px touch floor - Unit pins: `&back=%2F` / no-`back` byte-identity, `currentBack` single-writer guard, copy strings byte-pinned, phase-13 regression pins untouched Test / lint / coverage results: - `uv run pytest` → 3544 passed, 0 failed (full unit + integration) - `uv run pytest --cov=app --cov-report=term-missing` → TOTAL 99% (>90% gate) - `uv run pytest tests/e2e/test_document_viewer_context.py -v --no-cov` → 8 passed in 47.33s, in isolation (DB up, mock LLM) - `uv run ruff check . && uv run pyright` → clean (0 errors/warnings) Completion criteria: all met — (1) chat→modal→Full page: `href="/"` + "Chat"; Sources→modal→Full page: `href="/sources.html"` + "Sources" with `back=` asserted absent; (2) no-`back` URLs byte-identical to pre-phase; (3) Copy path: "Path copied." on success (clipboard readback), prefilled select-on-focus fallback field + "Path ready — copy it from the field." on rejected clipboard, both surfaces parameterized; (4) copied string exactly `docs/homelab/kubernetes.md`; (5) full suite green, E2E isolated green, lint clean, coverage 99%; (6) commit by harness. Documentation: README.md reviewed in full — phase-153 feature already named in the Chat section; routes, env reference, workflows, deployment all consistent — no changes needed. AGENTS.md reviewed in full — rules, gates, and quick-reference commands verified against the repo (incl. `test_smoke.py`, `.env.example`, gitignore entries) — consistent, no changes needed. Notable: pytest 9.1.1 quirk — a doubled `-q` (pyproject `addopts` + explicit `-q`) swallows the final "N passed" summary line while still exiting 0; the plain `uv run pytest` gate command prints it. No defects found in prior work. Next pending phase: `154_sync_status_freshness`.	2026-10-04 09:23:54 -04:00
ducoterra	12fa69b7ea	phase: 152_sync_progress_image_pass Build and Push Containers / build-and-push-app (push) Successful in 3m34s Details Build and Push Containers / build-and-push-db (push) Successful in 23s Details All criteria verified. The CLI path is hook-less (only `app/api/sync.py` passes the hook), and the byte-identity is pinned by `test_on_image_progress_none_run_is_byte_identical`. ## Final Report — Phase 152 final verification pass - Verified (no new code needed): `SyncStatus.images_done/images_total` + reset/clear rules in `app/api/sync.py`; `on_image_progress` threaded through the importer's three PDF vision spans with the continuous per-file counter; the `_image_hook` closure; `sources.js` `· image n/m` label part (box + title + aria). - C1 status climbs 1→N + UI shows `· image n/m`: ✅ unit 3/15→15/15, integration 1/15→7/15, E2E 1/4→4/4 (title/aria ride the full string) - C2 never frozen: ✅ E2E asserts ≥3 distinct positions, starting at 1, non-decreasing, ≤ total, reaching it - C3 cleared at overview/summaries + all terminals; per-file reset via `_hook`; no stale position for image-less files: ✅ unit pins + E2E settle (image part gone in box/title/aria, endpoint 0/0) - C4 `/api/sync/status` additive-only: ✅ full-dict pin passes (all pre-existing keys unchanged + the two new 0/0 keys) - C5 hook-less caller byte-identical: ✅ CLI passes no hook; `test_on_image_progress_none_run_is_byte_identical` green - C6 `uv run pytest`: 3526 passed, exit 0 (95s); dedicated E2E in isolation: 2 passed (95s); `uv run ruff check . && uv run pyright`: clean; coverage: 99% on `app/` (>90% gate) - Regression: all five neighbouring E2E suites green in isolation (progress_box 8, chunk_progress 2, label_mobile 4, pdf_support 6, image_documents 4) - C7 atomic commit: left to the harness (no git index/history touched per rules) - Docs: README.md — sync-label paragraph already updated this phase, accurately; all `.env.example` vars documented; routes/commands verified — no changes needed. AGENTS.md — all references (PLAN, user_stories, test_smoke.py, .env.example, gpg config, .gitignore) verified — no changes needed - Defects found in prior work: none (one prior env-leak defect was already fixed inside this phase's task 04, conftest) - No live-infrastructure touched; no ntfy used. Next pending phase: none — `todo/` held only this phase	2026-10-03 01:52:41 -04:00
ducoterra	c7cfcd26b5	phase: 151_pdf_image_extraction Build and Push Containers / build-and-push-app (push) Successful in 2m24s Details Build and Push Containers / build-and-push-db (push) Successful in 13s Details The 149/150 CSS changes touch the sources-page sync UI visible behind the modal, so the regenerated screenshot is the accurate record of the current UI (house convention — the suite rewrites it each run; it was re-committed in phases 144/145/148 the same way). I'll keep it in the working tree. All verification is complete. Final state: Phase 151 — final verification pass: complete, project 100% green. - Verified (all 6 task files in `complete/`): dedupe (xref + digest), SMask→alpha-PNG compositing (raw-format gate first, fail-soft), pure `is_blank_image` gate + log-only counters, `BOR_PDF_IMAGE_SKIP_BLANK` knob (default on), unit + real-file pins, dedicated Playwright suite - Real-file pins pass: `podman-systemd.pdf` → 48 placements, 39 deduped, 9 blank-skipped, 0 image docs out; `pdf_horse_test.pdf` → masked JPEG composited to alpha PNG, kept; `players_handbook.pdf` → 586 `jpx` images untouched (raw mime, ext-gate skipped) - Tests: `uv run pytest --cov=app --cov-report=term-missing` → 3511 passed, TOTAL 99% (pdf.py 100%, importer.py 99%, config.py 100%); dedicated E2E `tests/e2e/test_pdf_image_extraction.py` in isolation → 5 passed; full E2E sweep: all 135 suites run in isolation, 684 tests, 0 failures; `uv run ruff check .` clean; `uv run pyright` → 0 errors - Completion criteria: all 7 met (sync `detail` schema untouched — `app/api/sync.py`/`app/schemas.py` unmodified; counters in the shared `import_sources` → `summary.log()` path; commit left to the harness per instructions) - Docs: README.md and AGENTS.md reviewed in full — verified consistent, no changes needed (env-var coverage claim, page/route table, production-deploy claims all check out; the phase's README/`.env.example` additions match the code). Note: PLAN.md §7.1's 46rem chat column is superseded by phase 100 (AGENTS.md rule 5 states this correctly; PLAN.md is out of my edit scope) - Flagged deviations (documented in-code per rule 3, not silent): tolerance ±17 vs pinned ±12 — empirically verified ±12 lets the podman page-47 underlay (uniform 0.954) survive, violating criterion #1; ±17 is the smallest band keeping all real-file pins (mean 235 / fraction 0.98 unchanged); gate measures the base stream, not the premultiplied composite (which darkens transparent regions and would miss the underlays) - Next pending phase: `152_sync_progress_image_pass`	2026-10-02 07:16:08 -04:00
ducoterra	edf6048a0d	phase: 150_drop_sync_result Build and Push Containers / build-and-push-app (push) Successful in 2m24s Details Build and Push Containers / build-and-push-db (push) Successful in 13s Details Phase 150 final verification pass — complete, 100% green. All 6 task files were already in `complete/`, so this was verification + doc pass. - Verified: `#sync-progress` is the sole sync text surface + sole `aria-live` region (`role="status"`, polite, no `aria-hidden`); `span#sync-result` gone from HTML/JS/CSS/tests (incl. runtime-built `RETIRED_ID` absence pins in the unit suites); `setSyncProgress` single writer with text-driven visibility; running-only box write in `setSyncLabel`; all 9 settle/cancel sites routed; `requestCancel` pre-fetch clear is a NO-OP. - Tests: `uv run pytest` → 3463 passed; `uv run pytest --cov=app` → 99% on app/ (>90%); `uv run ruff check .` + `uv run pyright` → clean (0 errors); `tests/e2e/test_sync_progress_box.py --no-cov` → 8 passed in isolation; all 18 migrated sync/image-PDF E2E files green in isolation (77 tests). - Completion criteria: 1) grep clean ✅ 2) sole live region, attrs correct ✅ 3) in-flight/settle/cancel/idle box states proven by E2E + unit pins ✅ 4) icon-only running button + restore ✅ 5) full gates green ✅ 6) no completed-phase behavior change (18 family suites + full suite green) ✅ 7) commit — left to harness per pass instructions (working tree untouched, no `git add`/`commit`). - Documentation: README.md fixed 2 pre-existing inconsistencies (stale `~/Homelab`+`~/Deployments` source model in the intro — retired in phase 61 — now describes the git/local/archive Sources model; "Requires AIPI_KEY" in retrieval-quality now states `BOR_LLM_API_KEY` in `.env` or `$AIPI_KEY`, matching the scripts' real convention). Everything else (URL table, env defaults vs `app/config.py`, sync/phase-150 copy, prod claims) verified accurate. AGENTS.md: verified consistent — no changes needed. - Notable: no code changes were required — the phase implementation was correct as left; no live infrastructure touched. - Next pending phase: `151_pdf_image_extraction` in `.agents/phases/todo/`.	2026-10-02 02:35:03 -04:00
ducoterra	dd524246ec	phase: 149_sync_progress_box Build and Push Containers / build-and-push-app (push) Successful in 3m35s Details Build and Push Containers / build-and-push-db (push) Successful in 11s Details All verification complete. The `ink-soft`/`--surface` pair the box uses is already pinned AA by the existing theme E2E suites (8.2:1 dark, ~6.9:1 light). Everything is green — no fixes were needed. Phase 149 final verification report - Verified (no re-work needed): `#sync-progress` box wiring (single `setSyncLabel` writer with `running` flag; `is-running` class travels with the spin; aria-label owned by the writer), the panel/icon-only-button CSS, and the 5-test dedicated E2E; all 6 pre-existing sync E2Es' running pins migrated to the box, settled pins untouched. - Dedicated E2E: `uv run pytest tests/e2e/test_sync_progress_box.py -v --no-cov` → 5 passed in 198.6 s (isolation, slow-proxy mock; under the 600 s budget). - Full suite: `uv run pytest --cov=app --cov-report=term-missing` → 3463 passed, app/ coverage 99% (>90% gate). - Migrated sync E2Es, each in isolation: `test_sync_button` 3 passed, `test_sync_cancel` 3, `test_sync_chunk_progress` 2, `test_sync_label_mobile` 4, `test_sync_summary_visibility` 3, `test_sync_upload_progress` 4 — all green. - Lint/types: `uv run ruff check .` → All checks passed; `uv run pyright` → 0 errors. - Criteria: in-flight spinner-only button + full untruncated wrapped box (desktop & mobile 390×844, `scrollWidth ≤ clientWidth`) ✓; settle byte-identical ("Synced HH:MM" + `3 added`, box hidden, aria restored) ✓; `#sync-result` sole live region (box `aria-hidden`), mid-run reload re-attaches ✓; WCAG (AA contrast both themes via the pinned ink-soft/surface pair, focus-visible, reduced-motion kill intact at styles.css L2201) ✓; cancel/409/error/upload/status API unchanged (green suites above) ✓. - Documentation: README.md reviewed in full (sync-states paragraph now matches the shipped UI; env-var table matches `app/config.py` and covers all `.env.example` vars; pages/commands verified) and AGENTS.md reviewed in full — verified consistent, no changes needed. - Notable: no defects found in this or prior work; no live infrastructure touched. - Next pending phase: none — `todo/` will be empty once the harness moves 149 (only 149 was pending).	2026-10-01 21:14:48 -04:00
ducoterra	b233c8d714	phase: 148_pdf_pages_in_sources Build and Push Containers / build-and-push-app (push) Successful in 2m28s Details Build and Push Containers / build-and-push-db (push) Successful in 16s Details Phase 148 — final verification pass: complete, 100% green. - Verified (tasks 01–04 already implemented): page render/persist at index (`_persist_page_copies`, fail-soft, stale-replace, qualifier-loss, prune hook via `_delete_page_copies`); public `GET /api/documents/{id}/pages/{n}` (uuid4-credential, 404-all-non-servable, `image/png` + cache header); `DocContent.page_urls` additive-omitted; shared `renderDocument` strip (lazy imgs, "Page N" captions, text + Summary suppressed, onerror note, createElement-only); migration 0026; `pdf_page_dir` setting; `.env.example` entry - Completion criteria: (1) pictorial + fallback classes get `p{N}.png` + `page_count`, text-heavy gets neither — pinned, pass; (2) unchanged re-sync renders zero (fast path) — pass; (3) changed re-index replaces copies, qualifier-loss/prune delete — pass; (4) route 404 matrix + payload key absent-never-null — pass; (5) modal AND /document.html strip with suppression, text-heavy byte-identical — E2E pass; (6) see below; (7) no completed-phase drift — full suite green - Tests: `uv run pytest --cov=app --cov-report=term-missing` → 3461 passed, 0 failed, `app/` coverage 99% (>90%); `uv run pytest tests/e2e/test_pdf_pages_in_sources.py -v --no-cov` → 4 passed in isolation; `uv run ruff check .` clean; `uv run pyright` → 0 errors, 0 warnings - Documentation: README had 1 pre-existing inconsistency — the Production Deployment section's standalone `podman run` example (and compose note) omitted the required `BOR_ADMIN_PASSWORD`/`BOR_SESSION_SECRET` (the fail-loud boot gate the README's own Admin section documents — the container would refuse to start); fixed with the two `-e` flags + a note for the compose path. All else verified consistent: 70/70 `.env.example` vars documented, all defaults match `config.py`, pages table matches routes, Containerfile/esbuild/uid-10001/healthcheck/entrypoint claims accurate, QA commands match pytest config. AGENTS.md: verified consistent — no changes needed - Notable: repo uses `Containerfile` (Podman) — README's `podman build` example is valid as-is; no live infrastructure touched - Next pending phase: `149_sync_progress_box`	2026-10-01 16:58:01 -04:00
ducoterra	863519e980	phase: 147_sync_changed_only Build and Push Containers / build-and-push-app (push) Successful in 2m26s Details Build and Push Containers / build-and-push-db (push) Successful in 12s Details All defaults match. Verification complete — everything is green with no defects found. Phase 147 final verification pass — report - All 3 task files found in `complete/147_sync_changed_only/` → verification pass only; no code changes needed. - Verified: migration 0025 (`documents.file_hash` nullable String(64), no index) + model field; fast path at top of `_index_file` (streamed 1 MiB sha256 → row lookup → `_unchanged_doc`); stamping on all three branches' create/update + shared helper; pre-phase NULL-hash fallthrough; retriever/`content_hash` untouched. - Tests: `uv run pytest --cov=app --cov-report=term-missing` → 3438 passed, `app/` coverage 99% (>90% ✓); `uv run pytest tests/e2e/test_sync_changed_only.py -v --no-cov` → 3 passed in isolation ✓; `uv run ruff check . && uv run pyright` → all checks passed, 0 errors ✓; prior-phase `tests/e2e/test_sync_button.py` → 3 passed (no regression) ✓. - Completion criteria: all 7 pass — (1) column + round-trip ✓ (2) unchanged text/image/garbage-PDF/pictorial-PDF cost zero LLM/extraction/vision, `summary.unchanged` counted, rows byte-still ✓ (3) changed file re-indexes + re-stamps; bytes-changed/content-same stamps only ✓ (4) backfill/D1/D4 + log wordings pinned verbatim ✓ (5) `content_hash`/retriever byte-identical ✓ (6) all gates green ✓ (7) no prior-phase behavior change ✓. - Documentation: full review of README.md (1,031 lines) and AGENTS.md against the code: every `.env.example`/code `BOR_` var documented, all config defaults match `app/config.py`, quick-start/QA commands and referenced test files exist, `file://` URL + troubleshooting claims accurate; the phase's README "Updating the documents" edit is accurate. Verified consistent — no changes needed.* - Notable: no live-infrastructure changes (dev Postgres container used for the standard test gates only). Working tree left uncommitted per harness protocol. - Next pending phase: `148_pdf_pages_in_sources`.	2026-10-01 14:23:33 -04:00
ducoterra	ab3f5f685b	phase: 146_search_tool_scope Build and Push Containers / build-and-push-app (push) Successful in 2m24s Details Build and Push Containers / build-and-push-db (push) Successful in 13s Details Phase 146 final verification pass complete — all green, tree untouched by me. Verified (final pass — both tasks already in `complete/`): - Scoped grep streams `{"type":"tool","name":"grep","argument":<pattern>,"path":<source/path>}`; bare grep/read/ls frames dump byte-identical (unit matrix in `test_sse_events.py` + builder pins in `test_chat_gate.py` L1364–1448) - Tool line `🔎 Searching for <pattern> in <source/path>` (two `<code>` spans, `.grep-scope` sibling, no new emoji); bare line byte-identical (unit Node test + E2E) - Status label "… is searching for X in Y" scoped-only; `path` persisted additively on the saved tool record and re-rendered on `/?chat=<id>` restore; pre-phase records restore byte-identically (E2E tests 2 & 3) Results (exact commands): - `uv run pytest --cov=app --cov-report=term-missing` → 3419 passed, `app/` coverage 99% (>90% ✓) - `uv run pytest tests/e2e/test_search_tool_scope.py -v --no-cov` → 3 passed in isolation ✓ - `uv run ruff check . && uv run pyright` → clean (0 errors) ✓ Completion criteria: all 6 ✓ (wire shape, UI line, status label, save/restore, gates, no completed-phase behavior change — full suite green includes all prior-phase pins). Documentation: README.md (incl. its phase-146 section) and AGENTS.md reviewed in full against the codebase — verified consistent, no changes needed (`.env.example` ⊆ README config tables; no stale vars; phase-100 72rem rule in AGENTS.md §5 matches shipped CSS; no-CDN/smoke-DB/gpgsign claims all confirmed). Notable: none — no defects found, no live-infrastructure touched, nothing committed per harness protocol. Next pending phase: `147_sync_changed_only`.	2026-10-01 12:48:04 -04:00
ducoterra	32a3ec4f5e	phase: 145_git_source_links Build and Push Containers / build-and-push-app (push) Successful in 2m23s Details Build and Push Containers / build-and-push-db (push) Successful in 13s Details Phase 145 final verification pass — all green, no code changes needed - Verified (no defects found): resolver `origin_for_source` + `_url_basename` (scp/`.git`/trailing-slash, sanitize, ambiguity WARNING); `origin:`/`branch:` lines in all four read shapes via shared `_origin_lines`; HIGH `<tools>` origin rule (verbatim + only-byte-change pins); `DocContent.origin_url/origin_branch` (absent-never-null serializer); `renderDocument` "Original" anchor (copyable verbatim URL, `_blank`/`noopener`, branch in title); mock scripted origin-link flow (disjoint trigger — grep-verified vs all other E2E files) - Tests: `uv run pytest --cov=app --cov-report=term-missing` → 3402 passed, `app/` coverage 99% (>90% gate); `uv run pytest tests/e2e/test_git_source_links.py -v --no-cov` → 4 passed in isolation; `uv run ruff check .` → clean; `uv run pyright` → 0 errors, 0 warnings - Completion criteria: (1) git read results carry origin/branch, local byte-identical — ✅ (unit pins + E2E control); (2) HIGH `<tools>` rule pinned, LOW byte-identical — ✅; (3) modal AND /document.html show Original link, branch in label when pinned, nothing for local — ✅; (4) full suite green + coverage + E2E + lint/types — ✅; (5) no completed-phase behavior change (read header line 1, mock prefix, done frame/SourceRef untouched, LOW sha) — ✅ - Extra regression check: re-ran shared-mock E2E suites `test_read_line_ranges.py` (2 passed) and `test_document_viewer.py` (8 passed) — no cross-suite regressions from the `mock_llm.py` addition - Documentation: README.md reviewed in full (env table ⊇ `.env.example`, pages/routes, config defaults, scripts, 17-color palette, 300 s guard, 2 s sync poll, phase-145 provenance section matches implementation) and AGENTS.md (72rem container, no-CDN test, smoke test, gitignore, gates) — verified consistent, no changes needed - Notable: phase-116 screenshot PNG was regenerated during this phase's E2E runs (byte re-encode only, visually identical, correct no-anchor local-source meta row) — left in tree for the harness commit - Next pending phase: `146_search_tool_scope` (then 147, 148, 149)	2026-10-01 11:13:43 -04:00
ducoterra	486ceb4019	phase: 144_modal_back_button Build and Push Containers / build-and-push-app (push) Successful in 2m21s Details Build and Push Containers / build-and-push-db (push) Successful in 17s Details Phase 144 final verification pass — complete, 100% green. - Verified: all 3 tasks already implemented in-tree — `document-modal.js` history-aware modal (one state-only entry per open: push on open, adopt on forward re-open, in-place `replaceState(prev)` on button/Escape/backdrop close, `closingViaBack`-guarded back-close, top-level popstate listener), `tests/unit/test_frontend_doc_modal.py` source pins, `tests/e2e/test_modal_back_button.py` (4 tests). No code fixes needed. - Tests: `uv run pytest` → 3371 passed · `uv run pytest --cov=app --cov-report=term-missing` → 3371 passed, app/ 99% (gate >90%) · `uv run pytest tests/e2e/test_modal_back_button.py -v --no-cov` → 4 passed in isolation · regressions in isolation: `test_document_back_navigation.py` 3 passed, `test_kb_tree_nav.py` 4 passed · `uv run ruff check .` clean, `uv run pyright` 0 errors. - Completion criteria: back closes modal (URL/view/drill untouched; second back navigates as usual) ✅ · back→forward re-opens same doc, no duplicate entry ✅ · button/Escape/backdrop close leaves no dead back step ✅ (state byte-identity + modal-free back chain; `replaceState` can't shrink `history.length` — documented deviation, locked design forbids `history.back()/go()`) · all gates green ✅ · no behavior change in completed phases (pre-phase pins + both regression E2Es green) ✅. - Docs: README — one feature-description gap fixed (added the phase-144 Back/Forward modal behavior to the Chat section); all other README facts verified against code (routes, every `.env.example` var, all ~40 documented defaults vs `app/config.py`). AGENTS.md — verified consistent, no changes needed. - Decisions: no live-infrastructure work touched; all changes left uncommitted in the working tree per harness protocol. - Next pending phase: `145_git_source_links`.	2026-10-01 08:49:50 -04:00
ducoterra	a8c0402ad2	phase: 141_read_range_dedupe_fix Build and Push Containers / build-and-push-app (push) Successful in 2m37s Details Build and Push Containers / build-and-push-db (push) Successful in 12s Details All gates green and verified. Final report: Phase 141 final verification pass — complete - Verified (tasks 01–04 already in `complete/`): `AgentHolder.read_coverage` span recording (all 4 read outcomes, refusals record nothing); coverage dedupe matrix (range read of uncovered lines proceeds, fully-covered re-read → `ALREADY_IN_CONTEXT` with a now-true claim, partial plain re-read → `REREAD_PARTIAL` naming merged spans, `REREAD_TRUNCATED` retired, fast path retired per task 02); `TOOLS_SECTION` re-read sentence re-cut to coverage-true form (prompt lock re-pinned); owner-scenario integration repro (pure + truncated variants) and mock `read two ranges` flow + dedicated E2E — all match the task specs exactly; no code defects found. - Tests/lint/coverage: `uv run pytest --cov=app --cov-report=term-missing` → exit 0, TOTAL 99% (5498 stmts, `app/rag/agent.py` 99%) — run twice, both green; `uv run pytest tests/e2e/test_read_range_dedupe.py -v --no-cov` → 2 passed in isolation; `uv run ruff check . && uv run pyright` → All checks passed / 0 errors. - Completion criteria: (1) two different ranges both reach the model, re-covered re-read refused truthfully — ✅ (integration + E2E); (2) partial plain re-read gets the `offset`/`limit` teaching, false claim gone both directions — ✅; (3) plain-read + phase-131 result shapes byte-identical, existing pins pass unchanged — ✅; (4) all gate commands green, >90% — ✅; (5) no behavior change in completed phases (grep/ls, truncation notice, `read_docs`/`read_truncations` signals) — ✅ (whole project suite green). - Documentation: README.md — fixed pre-existing phase-140 gap: `BOR_PDF_PICTORIAL` / `BOR_PDF_PICTORIAL_MIN_CHARS` were in `.env.example`/Settings but undocumented (README claims every `.env.example` var is covered); added the pictorial-PDF-pass bullet to the PDF section + two config-reference rows. AGENTS.md — verified consistent (rules, quick-ref commands, phase refs all check out) — no changes needed. - Notable: overview's "fast path survives for holder-state rows" note is superseded by task 02's authoritative decision (every dedupe row resolves — "full" needs the true line count); implementation follows task 02. No phase files touched; changes left in the working tree for the harness commit. - Next pending phase: `142_kb_overview_freshness`.	2026-10-01 01:27:46 -04:00
ducoterra	5e87622b30	phase: 137_pdf_image_context Build and Push Containers / build-and-push-app (push) Successful in 2m51s Details Build and Push Containers / build-and-push-db (push) Successful in 13s Details All verification complete — everything is 100% green. Final report: Phase 137 final verification pass — all tasks already complete, all criteria verified - Full suite: `uv run pytest --cov=app --cov-report=term-missing` → 3272 passed, exit 0; `app/` coverage 99% (>90% ✓) - Phase E2E in isolation: `uv run pytest tests/e2e/test_pdf_image_context.py -v --no-cov` → 4 passed (forward context, display line, standalone parity, both-blocks markdown case) - Pre-existing suites in isolation: `test_pdf_support.py` + `test_image_anchor_context.py` + `test_image_documents.py` → 14 passed; ripple-edited `test_garbage_pdf.py` → 3 passed - Lint/types: `uv run ruff check .` → all passed; `uv run pyright` → 0 errors Completion criteria: (1) forward-path context in vision msg + stored `image_context`/summary — ✓ (unit builder/seam + integration fake-LLM + E2E); (2) both blocks document-first + standalone describe byte-identical — ✓ (combiner + standalone pins); (3) backfill with context + zero-vision idempotent re-sync + parent-gone origin-only — ✓ (6 integration tests); (4) suggestion block leads with `From <source>/<pdf> (page N)` — ✓ (renderer units + E2E); (5) all gates green — ✓ above; (6) no behavior change in phases 122/125/126 + sync `detail` shape untouched — ✓ (verified in code: new counter is log-only); (7) ruff+pyright — ✓; (8) commit — left to the harness per pipeline rules (working tree untouched by me). Documentation: README.md audited in full — the new phase-137 bullet verified against code (6 000-char cap, log-only `image_context_backfilled=N`, `<document>`-body locator placement), all env tables/defaults cross-checked vs `app/config.py` and `.env.example` — consistent, no changes needed. AGENTS.md: every rule/command verified — consistent, no changes needed. Notable deviations (pre-existing, documented in task-05 report, forced by design): `test_pdf_support.py`/`test_garbage_pdf.py` got minimal ripple edits (the "UNEDITED" pin was unsatisfiable once describe calls carry context by design); the unit `test_image_anchor_context.py` CONTEXT_PREFIX pin generalized per ASSUMPTION A5; one extra mock line (`_seed_context_line` accepts `From …`). Next pending phase: none — `todo/` holds only this phase.	2026-09-29 02:14:46 -04:00
ducoterra	0035bdf533	phase: 136_force_push_reset Build and Push Containers / build-and-push-app (push) Successful in 2m25s Details Build and Push Containers / build-and-push-db (push) Successful in 12s Details Everything is verified green and consistent. Final report: Phase 136 — final verification pass (all tasks already complete in `complete/136_force_push_reset/`): - Verified implemented: unified ff-or-reset update sequence in `scripts/git_sync.py::clone_or_pull` (phase-135 HEAD guard → shallow self-heal → `fetch origin <ref>` → `merge --ff-only` → on non-ff: SHA capture + `reset --hard FETCH_HEAD` + one WARNING line, returns normally); detached-HEAD fail-loud; `branch=None` legacy `git pull` deliberately gone - Completion criteria — all met: 1. ✅ Force push no longer fails sync (integration `test_clone_or_pull_force_push_resets_to_the_new_head` + API-seam `test_sync_pipeline_survives_a_force_push` + E2E run 2 asserts `success` and KB serves the V2 sentinel) 2. ✅ Unrelated-history force push handled by the same reset (`test_clone_or_pull_unrelated_history_force_push_resets`) 3. ✅ Broken fetch still fails loud (fetch-failure unit pins raise with no merge/reset argv; `test_main_git_failure_aborts_before_import`) 4. ✅ WARNING line pinned: one line, 7-char SHAs, checkout path, `origin/<ref>`, no URL (unit exact-string pin + integration caplog pin) 5. ✅ `uv run pytest --cov=app --cov-report=term-missing` → 3231 passed, app/ 99%; `uv run pytest tests/e2e/test_force_push_resync.py -v --no-cov` → 2 passed in isolation (10.6 s) 6. ✅ Phase-135 pins preserved (mismatch guard, `--branch` clone argv, `branch=None` fresh-clone argv all green in the 53-test run) - Test/lint results: `uv run pytest tests/unit/test_git_sync.py tests/integration/test_import_docs_git.py -v` → 53 passed; full suite 3231 passed (72 s); `uv run ruff check . && uv run pyright` → clean (0 errors) - Documentation: README.md git-sources section already updated this phase to the ff-or-reset contract; all `.env.example` vars documented; pages table matches router; AGENTS.md rules and quick-reference commands verified accurate (rule 5 correctly documents the phase-100 §7.1 supersession) — no changes needed - Notable: E2E "teeth" verification (fails on pre-phase code) is recorded in the task report; nothing was committed per harness protocol - Next pending phase: `todo/137_pdf_image_context`	2026-09-28 22:38:54 -04:00
ducoterra	d3f8c7f2c8	phase: 135_git_source_branch Build and Push Containers / build-and-push-app (push) Successful in 2m34s Details Build and Push Containers / build-and-push-db (push) Successful in 14s Details All verification complete. No edits were needed by this pass — the phase work and docs were already consistent and green. Phase 135 final verification pass — report - Verified all 5 tasks' work present & correct: migration 0024 (reversible), `GitSource.branch` + 4 schema shapes, `validate_branch_name` (full check order per design), `clone_or_pull(…, branch)` (HEAD guard first, `--branch` clone, fetch+ff merge), both call sites pass `row.branch`, UI (add-form field, editor field, row tag), `file://` URL transport. - Completion criteria: (1) branch-mirrored through Sync + CLI — pass (E2E + integration); (2) `branch=None` byte-identical — pass (`test_branch_none_argv_is_byte_identical_pre_phase_sequence` green); (3) fixed 422s / local-row 422 / tri-state — pass; (4) mismatch fails loudly with remove-and-re-add — pass (E2E); (5) coverage 99% >90%, E2E isolated green — pass; (6) no regressions — pass. - Tests: `uv run pytest --cov=app --cov-report=term-missing` → 3223 passed, app/ 99%; `uv run pytest tests/e2e/test_git_source_branch.py -v --no-cov` → 4 passed (16.4 s); `uv run ruff check .` clean; `uv run pyright` → 0 errors, 0 warnings. - Documentation: README.md reviewed in full — phase-135 branch section accurate; the phase's README diff also correctly fixed a pre-existing stale line (shallow `--depth 1` clone vs full-history, phase 107). Routes, env defaults, feature lists verified against code. AGENTS.md — all 10 rules + quick-reference verified (referenced tests, PLAN.md, phases dirs, commands all accurate). Verified consistent — no changes needed. - No live-infrastructure changes (dev DB already running and healthy; no live steps in this phase). - Next pending phase: `.agents/phases/todo/136_force_push_reset`.	2026-09-28 21:15:03 -04:00
ducoterra	fcac876d40	phase: 134_sync_cancel Build and Push Containers / build-and-push-app (push) Successful in 2m26s Details Build and Push Containers / build-and-push-db (push) Successful in 13s Details Phase 134 final verification pass — all green (all 3 task files already in `complete/`; no implementation was missing) - Verified: 5-state `SyncStatus` + `cancelled` terminal (error None, final counts kept), `POST /api/sync/cancel` (202/409/403), cooperative `_check_cancelled` boundaries, shutdown `CancelledError` contract preserved, `#sync-cancel-btn` show/hide + neutral "Sync cancelled" settle, 8-branch poll tree, re-attach — code, unit, integration, and E2E layers all present - `uv run pytest --cov=app --cov-report=term-missing` → 3150 passed, `app/` coverage 99% (gate: >90%) - `uv run pytest tests/e2e/test_sync_cancel.py -v --no-cov` (isolated) → 3 passed (47.6 s) - `uv run ruff check .` → clean; `uv run pyright` → 0 errors, 0 warnings Completion criteria: ① cancel endpoint 202/409/403 ✅ (unit + E2E) ② `cancelled` terminal reported by status, error null, counts kept ✅ (integration `test_cancel_mid_run_lands_in_cancelled_then_resyncs_clean`) ③ unrequested-cancel pin ✅ (`test_unrequested_cancel_is_never_swallowed_and_never_converts`) ④ UI lifecycle + clean re-sync (sentinel row, full 40-file import) ✅ (E2E) ⑤ suite/coverage/E2E gates ✅ ⑥ uncancelled runs byte-identical ✅ (all 3150 pre-existing tests green untouched) - Docs: README.md reviewed in full against code (pages, auth endpoints, every config default vs `app/config.py`, palette 9+8, fail-loud, cancel section) — consistent, no changes needed. AGENTS.md: fixed one pre-existing inaccuracy (rule 2 "move its file" → "move its directory" — phases are directories); everything else verified accurate - No live infrastructure touched; no deviations Next pending phase: `135_git_source_branch`	2026-09-28 18:08:11 -04:00
ducoterra	25de518dc9	phase: 133_pdf_screenshot_fallback Build and Push Containers / build-and-push-app (push) Successful in 2m25s Details Build and Push Containers / build-and-push-db (push) Successful in 14s Details All verification is complete — everything is green. No repo-side changes were needed in this pass (the phase's work in the working tree is correct and complete). ## Phase 133 final verification report - Verified (already implemented in working tree): `is_usable_pdf_text` gate (0.30 XML-ish / 0.05 non-printable / empty), `render_pdf_pages`, `_fallback_page_screenshots` + `pdfs_screenshotted` counter in `app/rag/{pdf,importer}.py`; regression pin, unit/integration/E2E suites. - Completion criteria: 1. Real guide clean through real pipeline — ✅ `test_pdf_hnb_guide_regression` + E2E preview/viewer checks (0 XML-ish lines, first-page text present). 2. Garbage PDF → vision fallback end to end — ✅ unit + E2E (stored content = canned per-page descriptions, garbage not stored, sync `detail` shape unchanged). 3. Clean PDF never burns a fallback vision call — ✅ unit + E2E (byte-faithful content). 4. Gates — ✅ `uv run pytest --cov=app --cov-report=term-missing`: 3129 passed, app/ 99% (>90%); `uv run pytest tests/e2e/test_garbage_pdf.py -v --no-cov`: 3 passed in isolation. 5. No behavior change to completed phases — ✅ entire suite green (all prior-phase tests included); `ruff check .` + `pyright` clean. 6. Production stale row — post-deploy re-sync verification (live infra, no repo work; no live changes made — deploy of `main` is the owner's step). - Documentation: README.md reviewed in full — every env default cross-checked against `app/config.py`, page routes against `app/main.py`, scripts/Containerfile/compose flags, `.env.example`; the phase-133 PDF bullet added in the working tree is accurate. AGENTS.md verified consistent (all referenced files/commands exist). No changes needed. - Next pending phase: `134_sync_cancel`.	2026-09-28 15:39:52 -04:00
ducoterra	4cb85e5baa	phase: 132_image_upload_feedback Build and Push Containers / build-and-push-app (push) Successful in 2m25s Details Build and Push Containers / build-and-push-db (push) Successful in 17s Details All verification complete. Final report: Phase 132 (image upload feedback) — final verification pass: 100% green - Verified all 3 tasks' implementations in the working tree: `index.html` status part (hidden-by-default, arc + "Uploading image…", pinned order), `app.js` `enterUploadState`/`exitUploadState` (entered after `attachUpload` guard pre-await, exited on BOTH resolution paths, `setUiState` untouched, idle "Send" restore byte-identical), `styles.css` `.is-uploading` rules (house `spin` keyframes, reduced-motion block, existing `:disabled` Send language), unit pins, E2E suite with route-delayed upload window. - Completion criteria — (1) mid-flight spinner + "Uploading image…", remove + Send disabled with "Uploading…": ✅ E2E-asserted; (2) second Send press = no second upload (request count exactly 1): ✅; (3) success clears + turn proceeds (bubble carries image); failure clears + banner + text/attachment remain: ✅; (4) `uv run pytest tests/e2e/test_image_upload_feedback.py -v --no-cov`: ✅ 3 passed (18.5 s, in isolation); (5) no behavior change in completed phases: ✅ (full suite green, A5 path-never-bytes re-pinned in E2E). - Full suite: `uv run pytest --cov=app --cov-report=term-missing` → 3108 passed, `app/` coverage 99% (>90% gate); `uv run ruff check .` → clean; `uv run pyright` → 0 errors. - Documentation: README.md fully reviewed (setup, pages, all `.env.example` vars + every default vs `app/config.py`, tools incl. phase-131 `read(offset,limit)`, image/PDF/sync/deploy sections) and AGENTS.md fully reviewed (rules, quick-reference commands, gitignore/gpg claims) — verified consistent; no changes needed. Phase-132 README bullet already in the working tree; CSS `:root` contrast-note corrections (15.3:1 / 8.2:1) re-verified mathematically correct (comments only). - Decisions: none — all task work was already implemented and correct; no fixes required. - Next pending phase: `133_pdf_screenshot_fallback`.	2026-09-28 13:45:31 -04:00
ducoterra	101156bada	phase: 131_read_line_ranges Build and Push Containers / build-and-push-app (push) Successful in 2m30s Details Build and Push Containers / build-and-push-db (push) Successful in 11s Details All 44 progress lines are pure dots, final line at 100%, exit 0. Everything is verified. Final report: Phase 131 — final verification pass (all 4 tasks already complete in working tree) - Verified implemented: `read(offset, limit)` schema + teaching descriptions; rewritten truncation notice; full 6-row dedupe matrix + range validation + `lines: a-b of N` header + slice cap in `_execute_tool`; wire-level `offset`/`limit` on `ChatToolEvent` (absent keys dropped → non-range frames byte-identical); mock-LLM `read the lines` flow; handbook repro (wording + line numbers derived from the real PDF at test time) - Tests: `uv run pytest --no-cov` → 3097 passed, exit 0; `uv run pytest --cov=app` → 99% on app/ (>90%); `uv run pytest tests/e2e/test_read_line_ranges.py -v --no-cov` → 2/2 in isolation (47.6 s); `tests/integration/test_read_line_ranges_handbook.py` → 2/2 (3.5 s); 10-file targeted E2E batch pinning pre-phase surfaces (grep/ls/plain-read/ALREADY_IN_CONTEXT/truncation) → 31/31; `ruff check .` clean; `pyright` 0 errors - Completion criteria: all 5 green — (1) exact range lines + `lines:` header, plain reads byte-identical (existing pins pass unchanged) ✅ (2) truncated-then-range succeeds end-to-end on the real handbook; other re-reads get teaching refusals ✅ (3) find-traps answered from real PDF text, no hardcoded wording ✅ (4) coverage + isolated E2E ✅ (5) no behavior change in completed phases ✅ - Docs: README + AGENTS reviewed in full. Fixed 3 inconsistencies: README missing `BOR_HISTORY_MAX_TURNS`/`BOR_HISTORY_MAX_CHARS` rows (pre-existing phase-74 gap — env-tunable, unit-pinned, undocumented); `.env.example` missing the same two vars (added); `.env.example` stale `BOR_READ_MAX_CHARS` comment (still said "grep-pointer notice (phase 95)" — updated to the phase-131 workflow notice). AGENTS.md verified consistent — no changes needed. All 67 `.env.example` vars documented, all defaults match `app/config.py`, pages/auth tables match live routes - Note: PLAN.md §7.1 still states the retired 46rem chat column (superseded by phase 100, which AGENTS.md rule 5 records correctly) — PLAN.md is off-limits for this pass, flagged only - Next pending phase: `132_image_upload_feedback`	2026-09-28 11:49:55 -04:00
ducoterra	c88c65641a	phase: 130_chat_answer_clusters Build and Push Containers / build-and-push-app (push) Successful in 2m27s Details Build and Push Containers / build-and-push-db (push) Successful in 12s Details Phase 130 — final verification pass: 100% green, complete. - Verified: chips-only row (no chip for image docs) → images-only row (`.msg-images`) → related row → `.msg-actions` last; `getActionsRow` used by all 3 buttons + stopped/failed notes; `markLastRetryable` save-re-append hack gone; in-place chip fallback on image-load failure; CSS right-align with per-button auto margins removed — implementation matches the design in every detail. - Completion criteria: (1) mixed citation renders chips→images→actions-last, DOM-asserted ✅ (2) all 3 buttons in one right-aligned `.msg-actions`; non-admin sees Retry-only; restore path identical ✅ (3) 404-bytes figure → plain chip, unit-pinned ✅ (4) E2E isolated ✅ (5) no behavior change (modal affordances, related tier, ARIA names) ✅ - Tests/lint/coverage: `uv run pytest tests/e2e/test_chat_answer_clusters.py -v --no-cov` → 4 passed; `uv run pytest --cov=app --cov-report=term-missing` → 3061 passed, 99% app coverage; the 4 E2E files this phase modified (test_answer_images, test_image_documents, test_pdf_support, test_responsive_polish) → 22 passed in isolation; `uv run ruff check .` clean, `uv run pyright` → 0 errors. - Docs: README.md — verified consistent in full (page table vs routes, env-var coverage vs `.env.example`, phase-130 cluster wording already in tree); no changes needed. AGENTS.md — fixed one pre-existing inconsistency: rule 5 still cited the retired "centered 46rem chat column"; now states the 72rem container contract (phase 100). - Decisions: PLAN.md §7.1 still says 46rem, but it's owner-managed (phase 100 records the supersession pending owner sign-off) and out of my editable scope — AGENTS.md now cross-references the supersession. - Next pending phase: `131_read_line_ranges` (todo/).	2026-09-28 07:49:37 -04:00
ducoterra	2d0f608246	phase: 129_sync_chunk_progress Build and Push Containers / build-and-push-app (push) Successful in 8m23s Details Build and Push Containers / build-and-push-db (push) Successful in 40s Details All green. Final report: Phase 129 final verification pass — 100% green (previous work intact; this pass re-verified everything and fixed two pre-existing README inconsistencies) - Verified on-spec: `LLMClient.embed` per-batch `on_progress` hook; importer `on_chunk_progress` plumbing (text/image/PDF branches; summary embed excluded); `SyncStatus.current_chunk/chunks_total` reset+clear contract; UI `.sync-label-chunk` pinned part with untruncated `title`/`#sync-result` - `uv run pytest --cov=app -q`: exit 0, ~3041 passed, 0 failed, `app/` coverage 99% (>90% gate) - `uv run pytest tests/e2e/test_sync_chunk_progress.py -v --no-cov` (isolated, DB up): 2 passed (endpoint chunk climb with true `chunk_document` total + UI `· chunk n/m` part) - `uv run ruff check .`: all checks passed · `uv run pyright`: 0 errors, 0 warnings - Completion criteria: all 5 ✅ (incl. no behavior change in completed phases — full suite green, CLI/chat no-op paths byte-identical) - Docs: README.md fixed 2 pre-existing inconsistencies (upload section claimed "unpacks + scans immediately" — phase 90 made it unpack+register only, scan deferred to Sync; troubleshooting claimed "120s client timeout" — actual guard is the 300 s pre-token `TURN_TIMEOUT_MS`). Phase-129 label behavior already documented. AGENTS.md re-verified consistent — no changes - Removed stray untracked `NOTES.md` (8-byte artifact); no live-infra changes; no commits — all changes left in working tree for the harness - Next pending phase: `130_chat_answer_clusters`	2026-09-28 03:38:14 -04:00
ducoterra	1139f007cf	phase: 128_sync_label_mobile Build and Push Containers / build-and-push-app (push) Successful in 2m32s Details Build and Push Containers / build-and-push-db (push) Successful in 12s Details Everything verified and 100% green. The earlier rejection was a report-format issue, not a test failure — all work is in the working tree. Final report: Phase 128 final pass — verified (all 3 tasks complete; no code defects found) - Verified: `#sync-label` parts markup, `setSyncLabel` writer, part builders (A4 untruncated title/aria-live), flex-row CSS + mobile media query — all match design 1:1. - `uv run pytest --cov=app --cov-report=term`: 3024 passed; TOTAL coverage 99% (>90% gate). - `uv run pytest tests/e2e/test_sync_label_mobile.py -v --no-cov`: 4 passed (119s, isolated). - `uv run ruff check .`: clean; `uv run pyright`: 0 errors. - Criteria: (1) mobile 390×844 label in-viewport, count visible in import+summaries — ✅ E2E; (2) desktop strings/cap/title unchanged — ✅ E2E+unit; (3) E2E isolated green — ✅; (4) full suite green — ✅. - Docs: README.md fixed 5 pre-existing gaps (PDF phase-126 section + `pdf` token, hidden-folders toggle ph.105, document dates ph.106, private git-source masked tokens ph.121, doc-draft Discard ph.115); AGENTS.md verified consistent — no changes. - Notable: double-`-q` (addopts `-q` + CLI `-q`) suppresses pytest's summary line — standard `-qq` behavior, not a bug; exit codes confirm green. - Next pending phase: `129_sync_chunk_progress`.	2026-09-27 23:58:57 -04:00
ducoterra	6e654df387	phase: 127_sync_incremental_folder_summaries Build and Push Containers / build-and-push-app (push) Successful in 2m25s Details Build and Push Containers / build-and-push-db (push) Successful in 15s Details All verified green — the previous rejection was a harness interruption (no code failure), and the working tree + doc fixes are intact. Phase 127 — final verification pass: 100% green (all 4 tasks already complete; no code changes needed this pass) - Re-verified implementation: `ImportSummary.changed_paths` at all 5 increment sites + `_prune`; `affected_folder_keys` + `generate_folder_summaries(changed_docs=…)` (restricted keys, prune pass both modes, hook total = affected count); sync changed-KB branch passes `changed_docs=summary.changed_paths`; CLI keeps full-regen contract - Tests: `uv run pytest --cov=app --cov-report=term-missing` → 3022 passed, `app/` coverage 99%; `uv run pytest tests/e2e/test_incremental_folder_summaries.py -v --no-cov` → 3 passed in isolation; `uv run ruff check . && uv run pyright` → clean, 0 errors - Completion criteria: one-file change rewrites only its folder chain (E2E pins siblings byte-identical, text AND `updated_at`) ✅; coverage >90% ✅; isolated E2E green ✅; no completed-phase behavior change (full suite green) ✅; atomic commit — delegated to the harness per pass rules (no git commands run by me) - Docs: README.md re-checked — all 7 previous-pass fixes still in place (Theme page row, drill-down `ls` + capped `read`, phase-124 answer images section + `BOR_ANSWER_IMAGES`, markdown-included summaries, 17-color palette, folder summaries in `BOR_LLM_SUMMARY_MODEL`, CLI regen note); AGENTS.md verified consistent — no changes needed - Deviations: none; untracked owner file `NOTES.md` left untouched (rides in the harness commit) - Next pending phase: `128_sync_label_mobile`	2026-09-27 21:12:25 -04:00
ducoterra	a6293f739b	docs(readme): document image support (phases 122/123) + full env reference New "Image support" section covering both opt-in capabilities gated by BOR_IMAGES: image documents (chat-model vision description becomes the document's content/summary, only the description is embedded, persistent image_dir copies, Sources thumbnails, viewer + inline chat source rendering, prune guard, fail-soft images_failed counting) and question images (config-gated composer paperclip, server-stored bytes under chat_image_dir, path — never base64 — persisted in saved/shared chats, current-turn-only multimodal message, toggle-off hinted error frame). Intro pointer, import-formats note, and a troubleshooting entry added. The Configuration reference is restructured into grouped tables and now documents EVERY variable in .env.example (was ~34 of 66): app, database pool/concurrency, LLM retries/timeout/thinking, RAG tiers + prompt budgets, chunking/embedding, recency/name-hit ranking, read cap, docs push, image support, and DEBUGPY_PORT. LLM-Generated: true	2026-09-25 08:37:28 -04:00
ducoterra	1374faf136	phase: 112_honesty_gate_weak_hits Build and Push Containers / build-and-push-app (push) Successful in 2m15s Details Build and Push Containers / build-and-push-db (push) Successful in 14s Details Phase 112 — final verification pass (all 4 tasks already complete in `complete/`): - Verified gate fix: `app/api/chat.py::plan_turn` — HIGH iff `best_cosine >= relevance_threshold` OR (`fts_hits > 0` AND `best_cosine >= lexical_support_floor`); `lexical_support_floor` (default 0.35, `BOR_LEXICAL_SUPPORT_FLOOR`, bounds-validated) in `app/config.py` + `.env.example`; A8 revision note (2026-09-14) in `.agents/PLAN.md`. - Verified prompt contract: `app/rag/prompts.py` diff is docstring-only (dated owner-decision-iii entry); `tests/unit/test_prompt_lock.py` byte-pins PERSONA/TOOLS_SECTION/DEFLECT body (sha256+length). - Verified README: L11 + L575 deflection copy refreshed; `grep "haven't done anything" README.md` → no hits; disclosed-answer behavior documented. - Tests: `uv run pytest --cov=app --cov-report=term-missing` → 2378 passed, 99% coverage (>90%); includes Mongolia-quadrant unit pins (fts>0 + cosine<floor → LOW). - E2E in isolation: `uv run pytest tests/e2e/test_honest_deflection.py -v --no-cov` → 4 passed (out-of-KB question: `deflected=true`, `sources==[]`, 2–3 suggestions); regression `test_chat_rag.py` + `test_retrieval_quality.py` → 7 passed. - Lint/types: `uv run ruff check .` → clean; `uv run pyright` → 0 errors. Completion criteria: weak-FTS→LOW unit-pinned ✅ · no false citations + 2–3 alternatives E2E ✅ · prompts byte-identical (test-pinned) + README matches ✅ · suite/coverage/e2e/lint all green ✅ · commit + phase move → left to harness (no `git commit` run, per rules; changes in working tree). Deviations: none. Next pending phase: `113_source_chip_quality`.	2026-09-15 00:37:38 -04:00
ducoterra	1f1c01c9f7	phase: 103_suggestions_session_openers Build and Push Containers / build-and-push-app (push) Successful in 2m32s Details Build and Push Containers / build-and-push-db (push) Successful in 12s Details Phase 103 final verification pass — all green. Verified (all 3 tasks already in `complete/`; no code changes needed): - `opening_questions` in `app/api/suggestions.py` — forward walk, one opener per chat (first non-blank user msg, A3), reads raw `messages` not `title` (A4), phase-80 order/dedup/cap/seed contracts; `last_questions` name gone from `app/`+`tests/` - Docs updated: `app/config.py` seed docstring, `.env.example` `BOR_SUGGESTIONS`, `README.md` — "session openers" wording - Diff scope correct: only the 6 expected files + phase-file moves; `app/rag/suggestions.py` and `frontend/` untouched Test / lint / coverage results: - `uv run pytest tests/integration/test_suggestions_api.py -v` → 12 passed - `uv run pytest tests/e2e/test_suggestion_chips.py -v --no-cov` → 8 passed in isolation (opener-only core pin included) - `test_responsive_polish.py` → 7 passed; `test_chat_persistence.py` → 4 passed (both isolated, no edits) - `uv run pytest --cov=app --cov-report=term-missing` → 2086 passed, TOTAL 99% (>90%); `app/api/suggestions.py` 100% - `uv run ruff check .` → clean; `uv run pyright` → 0 errors, 0 warnings Completion criteria: all 7 ✅ (follow-ups-never-surface pin; cap-across-chats pin; seed/dedup/case/partial/A3/401 pins; E2E suites isolated; deflection chips unchanged; full suite + lint; commit + dir move left to harness per executor rules). Deviations: none — no defects found; nothing changed in this pass. Next pending phase: `98_sync_summary_visibility` (numeric order in `todo/`).	2026-09-12 16:37:50 -04:00
ducoterra	d22d260b8b	phase: 91_admin_theme_tab Build and Push Containers / build-and-push-app (push) Successful in 5m43s Details Build and Push Containers / build-and-push-db (push) Successful in 12s Details All verification is complete — this pass needed no code changes. Final report: Phase 91 — Admin Theme tab: final verification pass (all 6 tasks already in `complete/`) - Verified pre-paint theming end-to-end: `ui_settings` store + resolver, admin `GET/PUT /api/ui-settings`, `CachingMiddleware` inline-`<style id="bor-theme">` injection before `</head>` (incl. `/shared/<token>` prefix branch, unit-pinned), CSP sha256 exemption for the inline tag, Theme tab shell + `theme.js` editor, CSS-file theming fully retired. - No defects found; zero changes made — working tree left exactly as the task executors left it. - Tests: `uv run pytest --cov=app` → 1841 passed, 0 failed (TOTAL coverage 99%; theming/ui_settings/caching all 100%); `uv run pytest tests/e2e/test_admin_theme_tab.py -v --no-cov` → 5 passed in isolation. - Lint/types: `uv run ruff check .` → All checks passed; `uv run pyright` → 0 errors, 0 warnings. - Criteria: (1) unset deployment byte-identical, no `#bor-theme` anywhere — ✓ (unit no-op test + E2E reset byte-compare); `rg "BOR_THEME\|themes/"` → single hit is the permitted doc-history comment in `frontend/index.html`. (2) admin-only gate + 403s for anonymous and token users — ✓ (E2E test 3). (3) saved theme inline before `</head>` on every page incl. `/shared/<token>`, computed `--brand` on first paint for admin + anonymous — ✓ (E2E test 2 + unit). (4) reset → byte-identical; 5 contrast pairs warn <4.5:1, non-blocking — ✓ (E2E tests 4–5). (5) suite green, >90% coverage, lint clean — ✓. (6) commit deferred to harness per rules. - Notable: `.agents/PLAN.md` is absent from the repo — the phase overview's Design section was used as the binding spec; no deviation resulted. - Next pending phase: none — 91 is the last phase in `todo/`.	2026-09-09 17:22:24 -04:00
ducoterra	7baca3d289	update README Build and Push Containers / build-and-push-app (push) Successful in 17s Details Build and Push Containers / build-and-push-db (push) Successful in 11s Details	2026-09-07 14:26:26 -04:00
ducoterra	7fce6572d0	feat: phases 77–80 — navbar view refresh, static background, API tokens, history suggestion chips Build and Push Containers / build-and-push-app (push) Successful in 1m45s Details Build and Push Containers / build-and-push-db (push) Successful in 13s Details Single consolidated commit for four completed, validated phases (77, 78, 79, 80). The pipeline run left all work uncommitted because the harness commits only with PHASE_COMMIT=1 while child executors are forbidden from committing; the phases themselves all passed validation and moved to .agents/phases/complete/. Phase 77 — navbar view refresh - router.js dispatches bor:view-refresh on re-show / active re-click / popstate (gated on wasMounted; first show and boot exempt) - History / RAG / Sources / Tuning re-fetch on refresh (admin branch); Chat deliberately excluded (stream survival) - History "Refresh" button (admin-only, in-flight disable + status line) - New story suite tests/e2e/test_navbar_refresh.py (7 tests) Phase 78 — static background - Removed the animated glow layers; static 44px grid over the flat --bg canvas; default and reduced-motion renders byte-identical - Updated background/theme E2E suites; removed bg-glow test pins Phase 79 — API tokens - api_tokens model + migration 0012; hash-only token service - Admin tokens API + Tokens admin view; POST /api/token-auth; live-revoking require_user on chat / suggestions / document content - Frontend token gate with localStorage cache; anonymous E2E suites migrated to token login - New story suite tests/e2e/test_api_tokens.py (9 tests) Phase 80 — history suggestion chips - last_questions() endpoint with SEED fallback; startNewChat() refetch - Seed-semantics docs (config.py, .env.example, README) - Integration state matrix + E2E suite rewritten to the 4 chip states Also included: phase-76 report artifacts and the repo restore-test-db skill (previously untracked), scripts/* ruff fixes from phase 77. Final gate state (phase 80 final pass, covers everything above): - uv run pytest --cov=app → 1637 passed, 0 failed, app/ coverage 99% - uv run ruff check . && uv run pyright → clean, 0 errors - Per-phase story E2E suites green in isolation	2026-09-07 12:39:01 -04:00
ducoterra	dbf2af26c6	refactor(agents): migrate .agent/ planning tree to .agents/ Standardize on the .agents/ directory (shared with project skills): phases/, user_stories/, reports/, screenshots/, validate.sh, and phase-sessions/ + pipeline.log all move to .agents/ (git mv preserves history; runtime artifacts move alongside). Updates every reference in AGENTS.md, README.md, .gitignore, app docstrings, and test story headers. Historical KB content in data/ and the runtime pipeline.log transcript are left untouched.	2026-09-05 10:57:07 -04:00
ducoterra	801639efcc	feat(agent): align the document tools with the harness-trained shape — ls, read(path), grep(pattern, path?)	2026-09-03 11:17:47 -04:00
ducoterra	137d5fa1a5	feat(sources): removing a source deletes its files and index entries behind a confirmation modal Build and Push Containers / build-and-push-app (push) Successful in 1m29s Details Build and Push Containers / build-and-push-db (push) Successful in 11s Details	2026-09-02 15:55:33 -04:00
ducoterra	15a16a8fe0	fix(agent): unambiguous document listing format for LLM parsing Build and Push Containers / build-and-push-app (push) Successful in 1m34s Details Build and Push Containers / build-and-push-db (push) Successful in 10s Details	2026-09-01 12:44:53 -04:00
ducoterra	c738105932	feat(web): customizable placeholder, footer text, and color theme via BOR_* env vars BOR_INPUT_PLACEHOLDER / BOR_FOOTER_TEXT / BOR_THEME (+ the indigo.css example theme); authoring guide: frontend/assets/themes/README.md, docs: README 'Customizing the look'.	2026-09-01 12:04:06 -04:00
ducoterra	c564e317ed	fix(web): never 304 a rewritten page — pages drop conditional validators, assets keep them	2026-08-31 01:35:28 -04:00
ducoterra	03d26255c6	feat(sources): upload tarball/zipfile archives as sources — unpack, scan, and replace in place Phase 49 (owner request, chat 2026-08-28: "The git sources page should remove local directory and should instead accept a tarball or zipfile upload which it will unpack and scan … reuploading the same tarball should not create a new folder, but should unpack and overwrite the previously unpacked content" — design confirmed in the same conversation): * POST /api/git-sources/upload (admin-only, require_admin): accepts .tar/.tar.gz/.tgz/.zip, streams it with the BOR_UPLOAD_MAX_MB cap (bounds BOTH the compressed upload and the total extracted bytes — zip-bomb guard), safely unpacks (absolute/traversal/symlink/hardlink escape and device/FIFO members rejected), and atomically swaps the content in over BOR_UPLOAD_DIR/<name>/ (name = filename minus the archive suffix — no missing window, a failed upload never touches the existing folder/row/KB). The git_sources row is upserted by path (kind='local', no duplicates, added_at preserved), the models are checked fail-fast (503 sanitized when down — the folder/row stay committed and the next sync/re-upload retries idempotently), and the source is scanned synchronously in the request (single-source import_sources prune=True + change-gated KB overview), answering 200 with the sync-style counts. One upload at a time (409); the request session is released before the scan so a concurrent TRUNCATE cannot deadlock against it. * app/rag/archive_upload.py: ArchiveUploadError, ARCHIVE_SUFFIXES, archive_source_name (safe-name derivation), unpack_archive (guarded zip/tar extraction with the extracted-byte cap, no partial state), swap_in (atomic replace with restore-on-failure) — fully unit-tested. * app/config.py + .env.example: BOR_UPLOAD_DIR (default ~/bor-sources/uploads, deliberately separate from the git checkouts) and BOR_UPLOAD_MAX_MB (default 512; a validator fails loud at startup on <= 0). * python-multipart added to the dependencies — FastAPI's required multipart parser (an A2 implementation detail, phase locked decision). * The Sources page: the phase-38 "Add a local directory" form is removed; #archive-upload-form takes its place (labeled file input, "Upload & scan" button, the §7.4 never-stale lifecycle, inline role=alert error, role=status count line); hint + table caption updated. The POST /api/git-sources kind=local API contract is UNCHANGED — a plain directory is still registrable via the API, and existing Local rows list/remove/sync exactly as before. * The phase-38 story E2E (test_local_directory_sources.py) is rewritten API-driven — the form it drove is gone; its acceptance stands. * The story E2E (test_archive_upload_sources.py): the swap, upload→scan→list (the deterministic "Uploading…" in-flight state, the Local row, /api/docs + the RAG catalog), same-filename re-upload (in-place replace, prune, no duplicate row, v2-only folder), the 422 inline error + recovery (the form is not wedged), and the anonymous gate + 403. * README: the archive-upload section (formats, naming rule, in-place replace, both new settings), the local-directory form removal noted, config reference rows for BOR_UPLOAD_DIR / BOR_UPLOAD_MAX_MB. Gates: unit+integration green, app/ coverage 99%, the story E2E green in isolation, the regression suites (git sources admin, local directory sources, sync button, import documents, nav rename, smoke, shared header) green in isolation, ruff + pyright clean. Note: per this phase's file-level staging, frontend/assets/styles.css also carries the small same-day in-flight owner rework already in the working tree (the .sign-in-mobile companion rule for the phase-48 mobile sign-in copy); the phase-49 change is the upload form's block.	2026-08-28 15:57:59 -04:00
ducoterra	5d679f5184	feat(import): index quadlet unit files and jinja templates (A9 revision) Phase 47 (owner permission 2026-08-27, TODO.md L10–11, roadmap R1): the full Podman quadlet family (.container, .network, .volume, .image, .pod, .kube, .swap, .os, .endpoint) and .j2 Jinja templates join the allowed + default A9 import formats, chunked as plain text (owner decision — no TOML/Jinja-aware splitter). No env configuration needed: a default import now indexes them. - app/config.py: _ALLOWED_IMPORT_EXTENSIONS + the default import_extensions CSV gain the ten names (the original seven first); the never-widen BOR_IMPORT_EXTENSIONS validator is untouched and still rejects truly unknown extensions. - app/rag/chunker.py: ten _FORMAT_CHUNKERS entries -> chunk_text (HARD_MAX_CHARS 1200 honored, unknown-suffix fallback unchanged); docstring/comments cite the A9 revision 2026-08-27. - tests/fixtures/docs/homelab/: quadlet/compose.container (realistic quadlet TOML, >1500 chars, [Unit]/[Service]/[Container] sections, RESE-QUADLET-SENTINEL-77aa), quadlet/lan.network, quadlet/cache.volume, templates/deploy.j2 (for/set/if Jinja constructs + RESE-JINJA-SENTINEL-33dd). Every suite that seeds the fixture tree updates its 9 -> 13 document-count constants. - tests/unit/test_config.py: allowed set carries all seventeen formats, default CSV + dotted import_extension_set include the ten, the validator accepts the new names and still rejects unknowns. - tests/unit/test_chunker.py: dispatch parity with chunk_text for every new suffix (parametrized), the .container fixture chunks >=2 under the cap with the sentinel surviving, the .j2 fixture keeps {{ }} verbatim, the unknown-suffix fallback is unchanged. - tests/unit/test_importer.py: a default-extensions walk over a temp tree indexes exactly the ten new files (unknown/hidden/excluded filtered), the original seven still walk, stem-title fallback holds. - tests/integration/test_import_quadlet_jinja.py (new): import_sources over a temp tree with .container/.volume/.j2 -> documents + chunks rows with stem titles; delta re-import updates only the changed .j2 doc; prune drops the deleted .volume doc with cascade. - tests/e2e/test_quadlet_jinja_import.py (new, story suite, mock-only, isolation): GET /api/docs (admin session) lists the four new-format docs with non-zero chunk counts and stem titles; the Sources table renders a row + .doc-link per file; the phase-26 modal shows the .container TOML ([Container] section + sentinel) with stem title and the container format badge; a RESE-JINJA-SENTINEL-33dd question FTS-matches the .j2 chunk -> honest-positive (A8: LOW requires zero FTS hits) — the bubble is not .is-deflected and a source chip names templates/deploy.j2. - README.md + .env.example: the extended default format set (A9 revised 2026-08-27, plain-text chunking, narrow-only rule intact). - .agent/PLAN.md: the A9 revision (owner-locked R1) — A9 row status, the revision note under the anchors table, and the §5 chunking-policy + §11 workflow lines. The only PLAN edit this phase. Gates: uv run pytest 795 passed; app/ coverage TOTAL 99% (>90%); ruff check + pyright clean; story E2E 4/4 in isolation (DB up); regression E2E suites test_import_documents (3) / test_sync_button (3) / test_git_sources_admin (6) green in isolation. Also records the 47_quadlet_jinja_import task-file moves (01–03) todo/ -> complete/.	2026-08-28 07:02:24 -04:00
ducoterra	b855d0aef9	feat(rag): unbounded agent tool calls behind a round cap (owner revision) Phase 45 (owner permission 2026-08-27, TODO.md L8: "allow the LLM to make as many tool calls as it wants"): the phase-37 per-turn tool budgets (BOR_AGENT_LIST_CALLS / BOR_AGENT_READ_CALLS, default 1 each) and their exhaustion refusals are removed — a grounded turn now offers list_documents / read_document for the whole turn (re-lists included), bounded only by the round cap: - app/config.py: agent_max_rounds (BOR_AGENT_MAX_ROUNDS, default 10, negative rejected) replaces agent_list_calls / agent_read_calls; .env.example + README document the single knob; app/rag/prompts.py docstrings follow. - app/rag/agent.py: the loop runs tools until the model answers or rounds >= max_rounds, at which point it forces one final no-tools answer (the cap is the only forced exit); 0 = no tools — exactly one tools=None request, byte-identical to the pre-phase-37 path (the kill switch). Rejected calls (unknown tool / missing args / already-in-context / unknown path) still consume a round, so pathological rejected-call streams are bounded by the cap. The per-call log line is now tool/args/round=N/M; the per-turn tool_calls=N field and the tool SSE event are unchanged. - tests/e2e/mock_llm.py: MULTI_READ_TRIGGER ("read two documents") — the deterministic list -> read #1 -> read #2 -> forced-answer flow (byte-stable "I read <sp1> and <sp2>." line), classified by the count of tool-role read results; the phase-37 single-read flow stays byte-identical (unit-pinned in tests/unit/test_mock_tool_flow.py). - tests/e2e/test_agent_unlimited_tools.py (new, story suite, mock-only): three tool frames/lines in order (one list, two reads — the second read is what the old read budget refused) + the both-named non-deflected answer; done.sources + chips = retrieval doc + both reads, deduped; no budget refusal rendered; the single-read marker flow regression (exactly one read, single tool pair). - .agent/PLAN.md: the phase-45 SSE revision note (owner-locked, R2) — the only PLAN edit this phase; the phase-37 note's budget clause is marked removed. Unit/integration rewrites (test_agent.py round-cap matrix incl. the kill switch and rejected-call spam, test_config.py, test_chat_api.py agent_max_rounds=0 fixtures) landed with the server core so every gate stays green. uv run pytest: 756 passed, app/ coverage 99%; ruff + pyright clean; story E2E 4/4 in isolation (ran twice); regression E2E suites (agent_document_tools unmodified, chat_rag, smoke) green in isolation. Also records the 45_agent_unlimited_tools todo/ -> complete/ task-file moves (00/01/02 pending in the working tree, task 03 moves on success).	2026-08-28 04:50:56 -04:00
ducoterra	fe55be0c35	feat(brand): configurable app name — BOR_APP_NAME drives /api/config + the frontend brand layer Build and Push Containers / build-and-push (push) Successful in 1m50s Details One env var (BOR_APP_NAME, default "Brain of Reese") now drives the app's display name everywhere (TODO.md L12 — owner ask: "a way to customize the name for 'Brain of'. Should be an env var."). The existing app_name setting is the source of truth (phase locked decision — no new variable, no rename); with the variable unset the app is byte-identical to before. Endpoint (A10 public/stateless, no secrets): GET /api/config → exactly {app_name, version} (app/api/config.py, the health.py pattern; registered before the static mount). Integration tests: anonymous 200, default values, a Settings override follows, key set is exactly two keys — no other setting may leak in later. Frontend brand layer (A11 — runtime fetch, static templates stay static): assets/brand.js — a CLASSIC script, first on all six pages, so its top level runs at parse time: window.BOR_BRAND = "Brain of Reese" synchronously (the default renders immediately, no blank flash), then a no-store fetch of /api/config applies the name — document.title (global replace), every .brand-text (a name starting "Brain of " keeps the bold split Brain of <strong>rest</strong>, any other name renders plain; the operator-controlled name is HTML-escaped before innerHTML), a TreeWalker over text nodes (script/style rejected — page source never rewritten), and the aria-label/placeholder/meta-content attributes. Fetch failure keeps the default + console.warn (the loadHealth house style). app.js (status labels, typing label, elapsed-hint aria, tool labels) and document.js (viewer titles) read window.BOR_BRAND at CALL time via brand() — a label set after the fetch lands carries the configured name. Containerfile: esbuild minify line for brand.js (classic, like markdown.js); the phase-33 ?v= cache-busting picks the new asset ref up automatically. E2E (A16 — one story, one file, isolated): test_configurable_brand.py boots a SECOND app instance (same DB/mock-LLM/admin-auth env block, port APP_PORT+1, BOR_APP_NAME="Brain of Testy") — the shared conftest server keeps the default name so every other suite's title/label assertions stay untouched — and asserts /api/config on both instances, the index title/brand/greeting/ #messages aria-label, the sources + login page titles, and one pre-token chat turn (think out loud marker) whose #send-status reads "Brain of Testy is thinking"; the no-op regression pins the shared server's default bytes. Docs: .env.example App section + README configuration reference — what it affects (titles, header brand, status labels, aria text), the default, the bold-split rendering rule. Gates: 695 unit+integration passed, app/ coverage 99% (>90%), story E2E green in isolation (two consecutive runs), brand-string suites (smoke, shared header, header consistency, chat persistence) green, ruff + pyright clean.	2026-08-27 02:24:16 -04:00
ducoterra	94d7228510	feat(admin): local directory sources — kind/path on git_sources, combined sync + import, page form + badges An existing, non-git directory is now a first-class source alongside the git repos: one table (git_sources + kind discriminator — A13 reversible migration), one admin page, one Sync button (phase locked decisions; the phase-35 table is extended, not duplicated). The DB is the local-source registry — no env var for local paths; BOR_GIT_SOURCES stays a git-only empty-table fallback. Migration 0007 (reversible, up/down integration-tested): git_sources.kind TEXT NOT NULL DEFAULT 'git' + ck_git_sources_kind (kind IN ('git','local')); git_sources.path TEXT NULL + uq_git_sources_path (mirrors 0006's uq_git_sources_url). Existing rows read kind='git', path=NULL. API (phase-35 contract extended, git byte-identical): POST kind=local requires path — trimmed, ~-expanded, absolute + an existing server directory, else 422 naming the path (fail loud at add-time); duplicate path 409 (named); wrong field combos 422. GET rows carry kind + path (git and env rows: path null); anonymous still 403 on every route (A10). Sync + import_docs resolve DB git + local rows together: git → clone_or_pull (unchanged); local → re-verified .is_dir() AT SYNC TIME (it may have moved/deleted since add-time) — a missing dir raises "local source missing: <path>" (sanitized) before anything imports; one import_sources(..., prune=True) over the single combined list (pruning covers the union). Both-empty fails loudly ("no sources configured (git or local)"); --source still wins; the env fallback stays git-only. Page: second "Add a local directory" form (the same §7.4 never-stale button + inline-error lifecycle as the git form; 422/409 details name the path), Git/Local badges on rows (text + color, never color alone — WCAG), updated hint (git + local together, union prune); the anonymous sign-in gate is unchanged. Tests: 0007 up/down; the API local-kind matrix (403/201/422/409) with the git-kind suite green unchanged; the sync pipeline local/git/ mixed/missing against a host temp dir (the KB actually updated); import_docs DB resolution + --source precedence. Story E2E (isolated, deterministic across runs): add (Local badge) → missing path inline 422 naming it / duplicate 409 → the real Sync button imports the fixture file (GET /api/docs + sentinel in its content) → file deleted + sync prunes it (union prune) → row removed; anonymous gate + 403s (phase-35 regression). test_git_sources_admin.py (phase 35) green UNCHANGED — no selector collision with the new form; test_sync_button.py green. Docs: README — the two managed kinds (git = clone/pull mirror; local = direct in-place walk), add-time validation, union pruning, "the DB is the local-source registry (no env var for local paths)"; .env.example — the env fallback is git-only.	2026-08-27 01:04:16 -04:00
ducoterra	15c1272828	feat(rag): agent document tools — list/read tools with env-tuned budgets, SSE tool events + "calling tool" UI Grounded chat turns now run the agent loop (app/rag/agent.py) instead of a bare chat_stream: while the per-turn budgets last (BOR_AGENT_LIST_CALLS / BOR_AGENT_READ_CALLS, default 1 each) the model gets list_documents (the indexed catalog, /api/docs order) and read_document (full text, never truncated — A7-revised contract); once both budgets are spent the tools key is dropped from the request and the model must answer. Rejected calls (unknown tool, unknown/missing path, document already in context, spent budget) consume no budget. Budgets 0/0 make exactly one tools=None request — byte-identical to the pre-phase path (budgets-as-kill-switch). Deflected turns keep the direct chat_stream (A8 unchanged; the LOW prompt never carries the <tools> section). SSE contract gains {"type":"tool","name":...,"argument": "source/path"\|null} frames ahead of the answer deltas (PLAN §4 extension, owner permission 2026-08-26); done.sources, query_log.sources and the per-turn log line (gains tool_calls=N) report the retrieval docs + read docs, deduped. The UI shows a "calling tool" button/label state and one visible .tool-call line per call above the answer; the lines persist with the chat record and re-render on reload. chat_stream passes tools through and accumulates streaming tool_calls deltas into ToolCallPiece (tools=None stays byte-identical). E2E: deterministic mock tool flow ("use your tools" + <tools> marker: list -> read first catalog line -> quoted answer) plus the story suite (marker flow, reload re-render, plain/deflected no-tool regressions). Docs: .env.example + README (the two tools, the budgets, the SSE tool frame, the "calling tool" UI state). probe: turbo tool_calls=supported 2026-08-26 (uv run python -m scripts.llm_probe --tools — non-streaming + streaming finish_reason=tool_calls, indexed delta.tool_calls partials)	2026-08-26 22:39:14 -04:00
ducoterra	1925bb66a8	feat(sources): admin page to add and remove git sources (TODO.md L4)	2026-08-26 18:42:28 -04:00

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