12 Commits

Include renames

Author	SHA1	Message	Date
ducoterra	ad7585d474	phase: 97_kb_tree_catalog ... All completion criteria verified — everything is green, no defects found. Final report: ## Phase 97 final verification pass — ALL GREEN **Verified (no code changes needed):** - `GET /api/docs/tree` (admin), `build_kb_tree` pure builder, `PATCH /api/folders/summary`, migration 0018 (`manually_edited`, head confirmed), generator skip/keep + `kept_manual` stat, RAG tree UI + edit affordance in `sources.js`/`index.html`/`styles.css` - `tests/e2e/test_kb_tree.py`: 8 passed — top level, drill source/folder, edit round-trip, clear, manual-desc-survives-sync, reload fallback, anonymous gate - Integration: tree shape/order/403/empty/indexed-only + PATCH update/create/root/clear/404/403/no-LLM + stat-walk equivalence (in `test_docs_api.py`); 3-field `folder_summaries=` import token preserved **Gates (exact commands):** - `uv run pytest --cov=app --cov-report=term-missing` → **2053 passed**, TOTAL coverage **99%** (>90% ✓) - `uv run ruff check . && uv run pyright` → **All checks passed / 0 errors** - `uv run pytest tests/e2e/test_kb_tree.py -v --no-cov` → **8 passed** in isolation - 30 story/RAG-view E2E suites run **one per process**: all passed, incl. `test_ls_tree_drilldown` (agent `ls` byte-identical ✓), `test_import_documents`, `test_edit_summaries`, `test_admin_auth`, `test_kb_overview` **Completion criteria:** tree view ✓ · edit round-trip + clear ✓ · manual persists/clear resets ✓ · `ls` unchanged ✓ · pytest/coverage/lint ✓ · E2E isolation ✓ · commit — left to harness per protocol (working tree untouched, `git add/commit` not run) **Deviations:** none. **Next pending phase:** none — `todo/` contains only 97 (96 already committed).	2026-09-11 22:48:02 -04:00
ducoterra	a49be80b8e	phase: 96_oneshot_resilience ... All checks complete. Final report: **Phase 96 (one-shot resilience) — final verification pass, all green** (all 4 task files already in `complete/`; verified the working-tree implementation against the design) - `LLMClient.chat()` empty-content retry (D1–D3) via `_chat_once` + `_EmptyContentError` (carries `finish_reason`), under `BOR_LLM_RETRIES`/`BOR_LLM_RETRY_DELAY` — verified in diff - `missing_folder_summaries()` + `generate_folder_summaries(only_missing=…)` — verified; `folder_summary_table_empty` deleted, both sync gates switched to the gap probe - `.env.example` comments updated (chat-turn stream + one-shot summary calls) **Test / lint / coverage results** - `uv run pytest --cov=app --cov-report=term-missing` → **1988 passed**, coverage **99%** (gate >90%) - `uv run pytest tests/e2e/test_oneshot_llm_retry.py -v --no-cov` → **2 passed** (isolated) - Regressions, each isolated: `test_ls_tree_drilldown` 3 passed, `test_sync_button` 3 passed, `test_local_directory_sources` 3 passed, `test_llm_retry` 4 passed - `uv run ruff check . && uv run pyright` → clean (0 errors) **Completion criteria:** retry-then-recover unit-pinned ✓ · exhaustion + `BOR_LLM_RETRIES=0` byte-identical ✓ · streaming path untouched ✓ · gap-fill both sync paths, other rows byte-identical incl. `updated_at` ✓ · no-gap zero-burn ✓ · phase E2E green ✓ · regression E2Es green ✓ · full suite + >90% + lint/types ✓ · no completed-phase behavior change (full suite green) ✓. Commit left to the harness per executor rules (working tree, 16 files). **Deviations:** none. **Next pending phase:** `97_kb_tree_catalog`.	2026-09-11 13:16:20 -04:00
ducoterra	d4943b4822	phase: 94_ls_tree_drilldown ... All green. Verification complete. **Phase 94 — `ls` drill-down tree: final verification pass (all 5 tasks were already complete; verified, nothing to fix)** - Verified `ls` 3-level tree (`app/rag/agent.py`): `ls()` sources + summaries, `ls(source)`/`ls(source/folder)` drill-down, 50-line file cap + grep-pointer note, NOT-A-FOLDER teaching refusal - Verified `folder_summaries` (migration 0017, model, `app/rag/folder_summaries.py` generator: `FOLDER_SUMMARY_MODE` marker, fail-soft per folder, ≥2-doc scope + prune) wired change-gated in both sync paths - Verified 10-turn fixture battery verdict recorded in `TOOL_CALLING_TESTING.md` §9 (2026-09-11): turbo PASS 19/19 contract, 98.7 s (−12.5…−13.2 % vs baseline); lite PASS 18/18, 43.6 s (+7.7 %) — accuracy at/above baseline, gate met - `uv run pytest --cov=app --cov-report=term-missing` → 1939 passed, 0 failed; TOTAL coverage **99 %** (folder_summaries.py 100 %) - `uv run ruff check .` → clean; `uv run pyright` → 0 errors, 0 warnings - E2E in isolation: `test_ls_tree_drilldown.py` 3 passed; `test_agent_document_tools` 4, `test_agent_unlimited_tools` 4, `test_harness_aligned_tools` 3, `test_search_tool` 3, `test_grep_regex_teaching` 2, `test_response_to_docs` 4 — all passed (read/grep contracts untouched) - Dedicated folder-summary tests (fail-soft, prune, both sync paths, migration): 46 passed - Completion criteria: all 6 met; working tree holds only phase-94 changes (commit left to harness per protocol) **Next pending phase:** `95_read_truncation_cap`	2026-09-11 00:59:35 -04:00
ducoterra	df91c6316c	phase: 92_theme_save_and_coverage ... **Phase 92 final verification pass — all green.** This pass re-verified the completed tasks (all 5 task files already in `complete/`) against every completion criterion; no defects found, nothing to fix. - Verified: 9th identity var `grid_line` end-to-end (migration `0015` at head, model/`theming.py`/schemas/API, 422 + built-in→NULL tests present); `styles.css` zero hardcoded literals outside `:root` + derived `--brand-*` vars; 9th picker in theme form; wordmark themed; `theme.js` save/reset/re-show/mount live-sync; dedicated E2E suite + phase-91 suite updated. - `uv run pytest --cov=app --cov-report=term-missing` → **1845 passed, exit 0, TOTAL 99%** (>90%) - `uv run ruff check .` → clean; `uv run pyright` → 0 errors, 0 warnings - `uv run pytest tests/e2e/test_theme_save_and_coverage.py -v --no-cov` → **3 passed** (save-live, reset-live, whole-site) - `uv run pytest tests/e2e/test_admin_theme_tab.py -v --no-cov` → **5 passed** - Criteria: (1) Save/Reset repaint open page, no nav, SPA-nav survives, pre-paint intact ✅; (2) both `rg` gates green (only `:root` + documented `#fff` Stop label; zero SVG hex attrs), grid/selection/hovers/wash/wordmark E2E-proven ✅; (3) no-op contract live-checked: row-less `/` = no tag + exact A1 CSP, grid-only row = 9-var tag in `COLOR_FIELDS` order + sha256 CSP, with-row ≡ row-less bytes ✅; (4) full suite/coverage/lint/both E2E ✅; (5) commit left to the harness per instructions. - Deviations (previously made, probe-verified, kept): live repaint uses CSSOM `<html>` overrides because Chromium blocks `<style>` textContent mutations under the locked sha256-only CSP (tag text still mirrors the next load; `<html>` style exact-saved after Save, empty after Reset); wordmark themed via 3 `.brand-mark` CSS rules instead of inline styles (task 03's inline attrs were CSP-blocked — fixed during task 04). - Next pending phase: none — `todo/` contains only `92_theme_save_and_coverage`.	2026-09-10 00:23:08 -04:00
ducoterra	8c706259e9	phase: 89_source_ignore_paths ... All verification complete — TODO.md was already cleared in the roadmap commit; the two extra unit-test diffs are necessary fake-signature adaptations for the new keywords. Everything is green, no fixes were needed. ## Phase 89 — final verification pass: ALL GREEN **Verified (all 6 task files present in `complete/`):** - `git_sources.ignore_paths` JSONB column + migration 0013; `alembic downgrade -1 && upgrade head` round-trips (head `0013`) - Importer: `normalize_ignore_path`/`is_ignored`/`_ignore_for_root`, `ignore` in walk + progress pre-walk, `ignore_by_root` in `import_sources` - API: GET/POST carry list; admin-only `PATCH` (replace, 404/422 fixed details, anonymous 403) - Pipelines wired: `_run_sync`, `_run_upload` re-upload, `scripts/import_docs.py` - Sources-page box: dialog, §7.4 save lifecycle, `N ignored` tag, a11y; env rows get no box **Test/lint results:** - `uv run pytest` → 1808 passed - `uv run pytest --cov=app --cov-report=term-missing` → TOTAL **99%** (>90%) - `uv run pytest tests/e2e/test_source_ignore_paths.py -v --no-cov` → 6 passed (isolated, DB up) - Regressions in isolation: `test_git_sources_admin` 6, `test_archive_upload_sources` 5, `test_sync_button` 3, `test_smoke` 3 — all passed - `uv run ruff check . && uv run pyright` → clean (0 errors) **Completion criteria:** box→PATCH 200→count+GET round-trip ✅ · sync excludes `ignore/` (no docs/chunks/embeddings/summaries) + prunes newly-ignored (pruned==2) ✅ · no-mid-path rule E2E ✅ · PATCH 404/422/replace/clear/403 ✅ · full gate green ✅ · commit + phase move left to harness per rules. **Deviations:** none blocking — E2E pins `files == 4` (overview's "5" was an off-by-one vs its own 6-file tree, documented in-test); `tests/unit/test_importer.py` + `test_sync_button.py` test-double fakes extended for the new keywords (needed for the suite to stay green). **Next pending phase:** none — `todo/` holds only this phase.	2026-09-09 01:45:42 -04:00
ducoterra	ffa919b8bf	fix(chat): keep in-flight answers alive across in-app view switches ... Root cause (owner repro, verified in a real browser 2026-09-06): the five navbar views (Chat, RAG, Sources, Tuning, History) were separate HTML documents, so a navbar click was a REAL cross-document navigation — the chat page unloaded, the in-flight SSE fetch was aborted, and the phase-48 teardown (app/api/chat.py `finally`, "chat: turn cancelled") stopped the model. Observed: send question -> click RAG mid-stream -> click Chat -> the answer never finished: no `query_log` row, and on return a dangling question with no brain record (the pre-token pagehide partial persist skips because `acc` is empty). Phase-48 LOCKED-DECISION REFINEMENT (owner-confirmed 2026-09-06, flagged per AGENTS.md rule 3, not silently deviated): "real navigation cancels the fetch" now means LEAVING THE APP — tab close, external/other-document navigation, the Stop button. In-app navbar switches are client-side view switches and no longer cancel. Fix — Option A (SPA shell), chosen over B (Service Worker owns the stream) and C (server-side turn registry + resume): - frontend/index.html is the shell: ONE `<main id="main">` holds the five `<section class="view">` blocks; hidden views carry BOTH `hidden` and `inert` (WCAG — no focus/keyboard traversal). The shared header, the single `doc-modal-*` skeleton, and the `#app-version` footer each exist exactly once; the per-view copies from the four folded pages are dropped. - New frontend/assets/router.js (vanilla module — no framework, no bundler, No-CDN rule intact): lazy-imports a view module on FIRST show only (mount-once, hide-forever — the chat view's in-flight SSE reader persists across switches; that persistence IS the fix); intercepts same-shell navbar links with preventDefault + history.pushState (never a document load); handles popstate; single writer of `.nav-link` active state (is-active + aria-current), document.title, and the per-view meta description (values carried over from the old pages' heads, brand-resolved at write time). - Each folded page's JS becomes `export async function mount(root)` — root-scoped queries; `initSharedHeader()` dropped (the header boots once in the shell via the chat module; the admin flag comes from the same cached `fetchIsAdmin()` promise — zero extra requests). - app/main.py: a small list-driven route factory serves the shell for /tuning.html, /sources.html, /git-sources.html, /history.html — registered AFTER the API routers and BEFORE the static catch-all (routes-first). The phase-33 caching middleware applies no-cache + `?v=` rewriting unchanged; app/core/caching.py needed NO change (the view paths did not change — pinned by the integration tests). - The four old view .html files are DELETED (one source of truth); deep links to the old URLs keep working (the router picks the view from the pathname); `/?chat=<id>` is unaffected; the Containerfile bundles router.js (inlining the lazy view modules) and drops the folded page files. - app/schemas.py: HistoryTurn.text cap 4000 -> 32000 — the shell keeps long saved answers in the chat, and the old cap (stricter than the 24_000-char total history budget) 422-rejected any second turn in such a chat (found by the phase-42 E2E suite on the shell). Boundaries: login.html, shared.html, doc-edit.html, document.html REMAIN separate documents (flow pages, not navbar tabs); a mid-stream navigation to doc-edit/document.html still cancels per phase 48 (follow-up candidate, out of scope). The SSE API is unchanged. Real departures still cancel the turn — phase 48 intact (pinned by tests/e2e/test_stop_generation.py, unchanged, and by the new suite's real-departure control). Tests: - Phase-20 suite REWRITTEN to the new semantics (tests/e2e/test_sources_midstream_bug.py): a navbar switch no longer cancels — the stream survives the switch and the FULL answer settles; the pagehide partial persist REMAINS for real departures (the partial's exact shape — first streamed chunk prefix, no done metadata — is still pinned there). - NEW story suite tests/e2e/test_nav_switch_keeps_stream.py (mock LLM): the owner repro (send -> RAG mid-stream -> Chat: window sentinel survives = same document, FULL answer, exactly one brain turn in bor.chat.v1, exactly one settled query_log row, auto-saved row matches) + the same mid-stream switch against the other three views + the real-departure-still-cancels control + the no-switch baseline. - tests/unit/test_frontend_router.py: source-level pins of the router invariants (click interceptor targets ONLY same-shell view paths, pushState-only switches, mount-once guard, hidden+inert pair, single-writer active state/title); shell-route integration tests (each folded path serves the shell with no-cache + `?v=` body; a non-view path still 404s); the file-reading unit pins re-pointed at the shell (the four view files are gone — the shell is the source of truth). Verification (this commit): full suite green — 1565 unit+integration tests, app/ coverage 99% (>90% floor); ruff + pyright clean; the phase's E2E suites green in isolation (house protocol, AGENTS.md rule 9). Owner repro verified in a real browser against the real LLM (dev server :8010, headful Chromium): "tell me about everquest" -> RAG mid-stream -> Chat — the answer completed with one brain bubble and no error banner, `query_log` gained exactly one settled row (deflected=True: the dev KB holds no EverQuest docs — the settle, not the topic, is the proof), zero "chat: turn cancelled" lines for that turn; the control (real navigation to /shared.html mid-stream) still cancelled (no settled row, the cancel line logged, the partial persisted on return). Screenshots: .agents/screenshots/76_manual_*. Phase 76 (76_spa_nav_shell) complete — moved to .agents/phases/complete/.	2026-09-06 06:31:31 -04:00
ducoterra	4677d86f49	feat(sources): real-time file progress for sync and upload — background upload with success toast	2026-09-01 23:51:43 -04:00
ducoterra	baefcde668	fix(web): retire the stale homelab-era copy — neutral, accurate defaults on every page ... Fixed: index.html meta description, empty-state sub and composer placeholder (A1); app/config.py default suggestion chips → the four neutral A2 defaults (BOR_SUGGESTIONS override unchanged); sources.html KB page-sub → the current source model (git repos + local dirs + uploaded archives, Sync pulls/imports); git-sources.html example URL → your-repo.git (A3); all 9 footers → neutral default in span.footer-text (the phase-62 hook); E2E/unit conftests force the code defaults so a local .env cannot leak corpus copy into tests; new unit text pins + dedicated E2E suite. Task 02 verification read-through — no change needed: - sources.html sync result/error copy (matches the real sync behavior) - tuning.html page-sub (accurate as written) - history.html page-sub (accurate as written) - doc-edit.html page-sub (accurate as written) - git-sources.html page-sub (accurate as written) - #sources-gate anonymous copy (accurate as written)	2026-09-01 10:54:50 -04:00
ducoterra	6bf7f456d4	show sync button for admin	2026-08-28 23:24:23 -04:00
ducoterra	6cf1df9bf2	feat(sync): fail fast with a modal when a model is unavailable ... TODO.md L4: with a dead model endpoint the sync discovered it only mid-import, after slow clones — and a tooltip on the button is not a readable error. - app/rag/llm.py: ModelUnavailableError + check_models(llm) — a tiny pre-sync probe (one short embedding + one 1-token-scale completion) that fails naming the unavailable model (embed first, then the summary model); the sync sanitizer still masks credentials. - app/api/sync.py: the probe is step 1 of _run_sync — before source resolution and before any clone_or_pull; a model failure is just another 'failed' state (no new endpoint, A10/A12 untouched). - frontend/assets/header.js: applySyncFailure now also opens the module-owned error modal (every page carrying #sync-btn, zero page-markup changes): lazily built backdrop + role=alertdialog panel, error text via textContent, close via button / Esc / backdrop, focus in-and-out to #sync-btn (with a body→#sync-btn fallback — the run's disabled button drops focus to <body>). - frontend/assets/styles.css: the modal on the phase-08 error palette (z-index above the header, .is-open open/close, reduced-motion stilling, 44px close target). - Tests: probe unit tests (both up / embed down / summary down / custom model names), sync integration (fail-fast before any clone, probe-before-effective_sources ordering, credential masking, healthy regression), the phase-41 source pins, and the story E2E (two module apps on distinct ports — dead endpoint on a closed loopback port vs session mock: ≤10 s fail-fast + modal contract, all three dismissal paths with focus out to #sync-btn, button title/.is-error + Sources banner untouched, healthy phase-32 lifecycle regression to 'Synced HH:MM'). E2E (isolation): test_sync_model_down.py 4/4, test_sync_button.py 3/3, test_git_sources_admin.py 6/6, test_local_directory_sources.py 3/3; unit+integration 721 passed, app/ coverage 99%; ruff + pyright clean.	2026-08-27 23:44:35 -04:00
ducoterra	b2d8696741	feat(ui): one consistent navbar on every page (TODO.md L3)	2026-08-26 15:39:42 -04:00
ducoterra	52136fe307	feat(admin): one-click sources sync — admin-only button triggers git clone/pull + re-import + KB overview refresh with polled live status	2026-08-25 21:39:38 -04:00