All gates green; working tree holds exactly the phase's changes for the harness to commit. ## Phase 179 — Final verification report - **Verified (all 3 tasks already complete in `complete/`)**: repro + CONFIRMED verdict, `asyncio.to_thread` fix, dedicated E2E suite. - `app/api/sync.py::_run_sync`: both git ops (`clone_or_pull`, `file_commit_dates`) now `await asyncio.to_thread(...)`; phase-134 boundary note + module docstring document worker-thread-runs-to-completion and the A3 DB-calls-stay-on-loop note. - **Tests / lint / coverage** (full suite 100% green): - `uv run pytest tests/integration/test_sync_git_freeze.py -v` → **4 passed** (post-fix probe <1.5 s during 3 s stub) - `uv run pytest tests/e2e/test_sync_git_freeze.py -v --no-cov` → **2 passed in 25.65 s in isolation** (wall guard 120 s holds) - `uv run pytest --cov=app --cov-report=term-missing` → **4173 passed**, `app/` coverage **99%** (`app/api/sync.py` 100%) - `uv run ruff check .` → All checks passed; `uv run pyright` → **0 errors** - **Completion criteria**: ① integration probe green + verdict (CONFIRMED, mechanism, measured 3.04 s→0.003 s) in docstring — **met**; ② off-loop git ops + boundary/A3 notes — **met**; ③ full suite green, coverage 99% >90%, ruff+pyright clean — **met**; ④ E2E green in isolation (responsive-poll + cancel-during-clone contracts) — **met**; ⑤ atomic commit + move to `complete/` — **harness-owned** (pipeline rule overrides per-phase self-commit; all changes staged-ready in the working tree). - **Documentation**: full README (1526 l) + AGENTS.md review — phase-179 bullets present and accurate (verified against fixture constants, `.env.example` fully covered by the config reference, pages table matches `app/main.py` shell routes, quick-reference commands/artifacts exist); **consistent — no further changes needed**. - **Notable**: task-03 pipeline sessions died on context overflow but their harness validation passed; this pass independently re-ran every gate to confirm. No live infra touched; no git index commands run. - **Next pending phase**: `180_markdown_inline_links_images`.
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AGENTS.md — Operating Rules for All Agents on This Repo
- Always read
.agents/PLAN.mdfirst. It contains the architecture, the LOCKED DECISIONS, the UI/UX standards, the data model, and the roadmap. Do not design anything that contradicts it. - Follow the phased execution protocol in
.agents/phases/. Work through.agents/phases/todo/in numeric order. When a phase is complete, move its directory to.agents/phases/complete/. - Strictly adhere to the LOCKED DECISIONS (PLAN §2). If you believe a LOCKED decision is wrong, stop and flag it — do not silently deviate.
- "One Story, One Phase": each user story in
.agents/user_stories/corresponds to a distinct execution phase, and every phase — story-driven or owner-directed — includes its own dedicated Playwright E2E test suite (one test file for the phase, run in isolation). - "UI Structure Check": before finalizing any UI component, verify that
it follows the layout principles in
.agents/PLAN.md§7 (proper container usage, the 72rem centered reading column — every page rides the 72rem container at every viewport; phase 100 supersedes §7.1's 46rem chat column, full-width tables on Sources — no skinny wasted-space lists; the catalogue tables (RAG, Sources, History) are bounded scroll panels —max-height: min(70vh, 64rem)— with a sticky header row; a clipped action label shows an ellipsis hint (.cell-clip) with the full text kept reachable via the control's aria-label (phase 156); an in-flight turn never paints an empty answer bubble — the box is created empty as the reasoning anchor and.msg .bubble:empty { display: none }hides it until the first answer token (phase 166); the document viewer's page strip is CLASS-scoped — the primary class shows the strip in place of the text, the additive class never hides the text: Text/Pages toggle group (aria-pressed, Text default) with the strip behind it (phase 163); a lazily-drilled KB-tree level keeps the level the user is ON rendered while its node fetch runs, and its ONE in-flight row (role="status") / alert + Retry row (role="alert", a real<button>) sits inside that same bounded scroll panel — and the stat cards read the server'stotals, never a walk of a depth-limited tree (phase 167)) and meets WCAG 2.1 AA basics (semantic landmarks, labels, contrast ≥4.5:1, focus-visible, aria-live for the stream). - "No CDN Rule": all CSS, JS, fonts, and images must be served statically
from within the FastAPI application. No
<script src="https://…">or<link href="https://…">tags in HTML templates unless bundled locally. An integration test enforces this on the index page. - "Debugpy Check": any new entrypoint must keep the conditional import —
debugpyis imported only whenDEBUGPY=1(seeapp/core/debugging.py); default off, never imported otherwise. - Git protocol: Git is mandatory. One atomic, professional commit per
completed phase (Conventional Commits, e.g.
feat(rag): stream RAG answers over SSE with source citations). Always append--no-gpg-sign(the repo also setscommit.gpgsign=false)..agents/is tracked and committed with the phase — only runtime artifacts (.agents/phase-sessions/,.agents/pipeline.log) are gitignored. - Test gates are non-negotiable: a phase is complete only when unit +
integration tests pass,
app/coverage is >90% (uv run pytest --cov=app --cov-report=term-missing), and the phase's Playwright E2E file passes in isolation (uv run pytest tests/e2e/test_<story>.py -v --no-cov). - Amply log, visibly feed back: server-side, log the required
per-turn line (PLAN §9) and the per-response byte-budget line
(
app/core/response_budget.py— oneapi method=… path=… status=… bytes=… enc=… duration_ms=…line per/api/*response, INFO at/overBOR_LOG_LARGE_RESPONSE_BYTES, read it withgrep ' :: api ', audit it withuv run python -m scripts.api_payload_audit, phase 167); UI-side, honor the "never stale" feedback contract (PLAN §7.4). - Never block the event loop: anything blocking (a
subprocess, synchronous file/network I/O, a heavy walk) reached from anasynchandler or a spawned background coroutine goes throughasyncio.to_thread(orcreate_subprocess_exec). The sync's git calls do (phase 179: a longgit cloneused to park the single uvicorn loop and freeze the whole HTTP surface, the 2 sGET /api/sync/statuspoll included — pinned bytests/integration/test_sync_git_freeze.pywith a 3 s stub and bytests/e2e/test_sync_git_freeze.pywith a real ~9 sfile://clone). A cooperative cancel unblocks the run at theto_threadawait; the worker thread itself runs to completion (threads are not interruptible) while the loop keeps serving — pinned by the same E2E module's cancel-during-clone test.
Quick reference
podman compose up -d db # start Postgres 17 + pgvector
cp .env.example .env # once; then edit
uv run alembic upgrade head # apply migrations
uv run uvicorn app.main:app --reload # dev server (add DEBUGPY=1 to debug)
uv run pytest # unit + integration
uv run pytest --cov=app --cov-report=term-missing
uv run playwright install chromium # once
uv run pytest tests/e2e/test_smoke.py -v --no-cov
uv run ruff check . && uv run pyright # lint + types
uv run python -m scripts.eval_retrieval --from-file tests/fixtures/retrieval_battery.txt # retrieval regression battery (phases 119/162)
uv run python -m scripts.api_payload_audit # endpoint byte audit vs the 256 KB budget (phase 167; app must be running)