refactor(agents): migrate .agent/ planning tree to .agents/

Standardize on the .agents/ directory (shared with project skills):
phases/, user_stories/, reports/, screenshots/, validate.sh, and
phase-sessions/ + pipeline.log all move to .agents/ (git mv preserves
history; runtime artifacts move alongside).

Updates every reference in AGENTS.md, README.md, .gitignore, app
docstrings, and test story headers. Historical KB content in data/
and the runtime pipeline.log transcript are left untouched.

tests/e2e/test_tuning_toggle_flash.py

@@ -26,7 +26,7 @@ browser-level contract:
   (``#nav-sources`` / ``#nav-git-sources`` / ``#nav-tuning``) holds:
   hidden for anonymous, revealed for admin.
 
-Story: ``.agent/user_stories/tuning-toggle-flash.md``
+Story: ``.agents/user_stories/tuning-toggle-flash.md``
 Run in isolation (DB must be up: ``podman compose up -d db``):
 
     uv run pytest tests/e2e/test_tuning_toggle_flash.py -v --no-cov