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refactor(agents): migrate .agent/ planning tree to .agents/

Browse Source 
Standardize on the .agents/ directory (shared with project skills):
phases/, user_stories/, reports/, screenshots/, validate.sh, and
phase-sessions/ + pipeline.log all move to .agents/ (git mv preserves
history; runtime artifacts move alongside).

Updates every reference in AGENTS.md, README.md, .gitignore, app
docstrings, and test story headers. Historical KB content in data/
and the runtime pipeline.log transcript are left untouched.
This commit is contained in:
ducoterra
2026-09-05 10:57:07 -04:00
parent 766702c750
commit dbf2af26c6
1118 changed files with 664 additions and 664 deletions
Download Patch File Download Diff File Expand all files Collapse all files
.agents/reports/61_stale_ui_copy/61_stale_ui_copy__00_phase.a1.err
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.agents/reports/61_stale_ui_copy/61_stale_ui_copy__00_phase.a1.md
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All verification passes green. Phase 61 is fully complete — final verification pass only, no code changes needed.
**Phase 61 (stale_ui_copy) — final verification report**
Verified (all 4 task files already in `complete/`; no work remaining, no defects found):
- Chat page: meta description, empty-state sub, composer placeholder, and the 4 default chips in `app/config.py` match the locked (A1/A2) copy exactly
- KB page-sub (`sources.html`) reads the locked current-source-model text (git repos + local dirs + uploaded archives, Sync pulls/re-imports); git-sources placeholder is `https://github.com/you/your-repo.git` (A3)
- All 9 pages carry `<span class="footer-text">Powered by self-hosted models</span>` (1 each); `grep -rn "Reese's" frontend/` empty; only remaining "homelab" is the A3-exempt L176 code comment in `index.html`
- Tests: `tests/unit/test_stale_ui_copy.py` + `tests/e2e/test_stale_ui_copy.py` exist with real pins (body-text scan, DOM assertions)
Results:
- `uv run pytest --cov=app --cov-report=term-missing`: **1201 passed**, coverage TOTAL **99%** (>90% ✓)
- `uv run ruff check . && uv run pyright`: clean (0 errors)
- `uv run pytest tests/e2e/test_stale_ui_copy.py -v --no-cov`: **5 passed** in isolation (DB up)
- Regression E2E in isolation: `test_smoke` 3 ✓, `test_configurable_brand` 5 ✓, `test_header_consistency` 3 ✓, `test_dark_tech_theme` 6 ✓
- Commit `baefcde` `--no-gpg-sign` exists, staged paths only `app/ frontend/ tests/` ✓
Completion criteria: all 7 met (E2E body scan, KB page-sub, 9 footers, suite/coverage/lint, phase E2E, regression suites, single commit).
Next pending phase: **62_ui_customization**.
.agents/reports/61_stale_ui_copy/61_stale_ui_copy__00_phase.a1.validate
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 101 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2458 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
.agents/reports/61_stale_ui_copy/61_stale_ui_copy__01_chat_page_copy.a1.err
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.agents/reports/61_stale_ui_copy/61_stale_ui_copy__01_chat_page_copy.a1.md
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**Task 01 complete — report**
Implemented:
- `frontend/index.html`: meta description, `.empty-state-sub`, and `#message-input` placeholder → locked neutral copy (A1); brand-embedding strings left untouched for the phase-39 brand layer.
- `app/config.py`: `suggestions` default → the four locked chips (A2); `BOR_SUGGESTIONS` override path unchanged.
- Defect fix (pre-existing — 3 `tests/integration/test_api.py` failures even on the pristine tree): the operator's local gitignored `.env` leaked into test apps via pydantic `env_file=".env"`. Made the test env hermetic — `tests/conftest.py` + `tests/e2e/conftest.py` now force `BOR_DOCS_REPO=""` and `BOR_SUGGESTIONS`=code default (derived from `Settings.model_fields` so it can't drift); `test_response_to_docs.py` "unconfigured" spawn forces empty docs repo (dotenv leak re-enabled the docs feature there too).
Results:
- `uv run pytest --cov=app` → 1193 passed; TOTAL 99% (>90%)
- `uv run ruff check .` → clean; `uv run pyright` → 0 errors
- `bash .agents/validate.sh` → validation OK
- `uv run pytest tests/e2e/test_smoke.py -v --no-cov` → 3 passed (validates the modified shared E2E server)
- Task grep criteria verified: `homelab` in `index.html` only at the L176 code comment (A3); no "deployment" text; one user-visible "Ask me anything"
Decisions: conftest changes are a required defect fix (suite was red before this task on this machine); no commit made (task 04 owns it).
Next pending: `02_sources_pages_copy.md` (KB page-sub + remaining page-subs + git-sources example URL).
.agents/reports/61_stale_ui_copy/61_stale_ui_copy__01_chat_page_copy.a1.validate
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 101 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2458 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
.agents/reports/61_stale_ui_copy/61_stale_ui_copy__02_sources_pages_copy.a1.err
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All gates green. Task 02 complete.
**Implemented**
- `frontend/sources.html` KB page-sub → locked (A1) copy: "Every file indexed from your configured sources — git repositories, local directories, and uploaded archives. Press **Sync sources** to pull the latest and re-import."
- `frontend/git-sources.html` example placeholder → `https://github.com/you/your-repo.git` (A3)
- `tests/unit/test_sync_button.py` — updated the stale copy-pin (it asserted the retired "clone the repos and re-import") to pin the new locked copy incl. the source-model wording
- Verification read-through, all **no change** (accurate today): `sources.js` sync result/error strings (server-driven, incl. "no sources configured (git or local)" from `app/api/sync.py:190`); page-subs in `tuning.html`, `history.html`, `doc-edit.html`, `git-sources.html`; `#sources-gate` copy (verified `GET /api/docs` admin-only, `GET /api/documents/content` public)
**Results**
- `uv run pytest --cov=app --cov-report=term` → 1193 passed, TOTAL **99%** (>90%)
- `uv run ruff check .` → clean; `uv run pyright` → 0 errors
- `uv run pytest tests/e2e/test_smoke.py -v --no-cov` → 3 passed; `tests/e2e/test_header_consistency.py -v --no-cov` → 3 passed
- `grep "Homelab\|Deployments" frontend/sources.html` and `grep "homelab" frontend/git-sources.html` both empty; only A3-exempt comments remain
**Decisions**
- One pre-existing test pinned the retired copy (defect in previously completed work) — updated to the locked replacement rather than the HTML reverted
- No commit made: the phase's single atomic commit belongs to task 04
**Next pending task:** `.agents/phases/todo/61_stale_ui_copy/03_footer_defaults.md`
.agents/reports/61_stale_ui_copy/61_stale_ui_copy__02_sources_pages_copy.a1.validate
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 101 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2458 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
.agents/reports/61_stale_ui_copy/61_stale_ui_copy__03_footer_defaults.a1.err
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.agents/reports/61_stale_ui_copy/61_stale_ui_copy__03_footer_defaults.a1.md
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Task 03 is complete and green.
**Task 03 — Neutral footer default on all 9 pages (`.footer-text` hook)**
- Replaced `<span>Powered by Reese's self-hosted models</span>` → `<span class="footer-text">Powered by self-hosted models</span>` on all 9 pages (`index`, `sources`, `tuning`, `document`, `git-sources`, `history`, `login`, `shared`, `doc-edit`), exactly at the audited line numbers; `.footer-version` siblings untouched
- Verified `grep -c 'class="footer-text"' frontend/*.html` → 1 per file, 9 total; `grep -rn "Reese's" frontend/` → empty
- No CSS/JS changes — the class is a selector-only hook for phase 62's `BOR_FOOTER_TEXT`; no test pinned the old footer text
- Tests: `uv run pytest --cov=app` → 1193 passed (exit 0), coverage TOTAL **99%** (>90% gate); `uv run ruff check . && uv run pyright` → clean
- Brand layer unaffected: `uv run pytest tests/unit/test_frontend_brand.py tests/e2e/test_configurable_brand.py -v --no-cov` → 15 passed (DB up, so run now rather than deferred to task 04)
- The 9-page unit pin is deliberately deferred to task 04 per the task file; no new tests added in this task (no logic changes)
- Not committed — the single atomic phase commit is task 04's job; working tree carries tasks 01–03 changes
- Note: `.agents/PLAN.md` is absent from the repo; owner-locked copy was taken from the phase's `00_phase.md` locked decisions (A1)
**Next pending task:** `.agents/phases/todo/61_stale_ui_copy/04_tests_and_commit.md`
.agents/reports/61_stale_ui_copy/61_stale_ui_copy__03_footer_defaults.a1.validate
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 101 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2458 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
.agents/reports/61_stale_ui_copy/61_stale_ui_copy__04_tests_and_commit.a1.err
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.agents/reports/61_stale_ui_copy/61_stale_ui_copy__04_tests_and_commit.a1.md
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Task 04 complete. Report:
**Implemented**
- `tests/unit/test_stale_ui_copy.py` (8 tests, house text-pin pattern): old homelab-era strings GONE from `index.html`/`sources.html`/`git-sources.html`; locked A1 strings present exactly once; `class="footer-text"` + neutral footer on all 9 pages; A2 chips in `app/config.py` in order; old chips absent from all of `app/` + `frontend/` (retired, not relocated).
- `tests/e2e/test_stale_ui_copy.py` (5 tests, shared conftest server, DB up): chat placeholder/meta/footer pins, full body scan for `homelab`/`deployment`, A2 chip list in order, sources `.page-sub` (no Homelab/Deployments, has "configured sources"), git-sources `#git-source-url` placeholder (A3) — all from the rendered DOM.
**Verification (all green)**
- `uv run pytest --cov=app` → 1201 passed, coverage TOTAL **99%** (>90% gate)
- `uv run pytest tests/e2e/test_stale_ui_copy.py -v --no-cov` → 5 passed (isolation, DB up)
- Regression E2E in isolation: `test_smoke.py` 3 ✓, `test_configurable_brand.py` 5 ✓, `test_header_consistency.py` 3 ✓, `test_dark_tech_theme.py` 6 ✓
- `uv run ruff check . && uv run pyright` → clean
**Decisions/deviations**
- Old git example URL also pinned (A3, "where they lived"); old-chip absence scan scoped to `app/`+`frontend/` (a repo-wide scan would hit the pin file itself).
- Atomic commit `baefcde` on `main` — staged `frontend/ tests/ app/` only, `--no-gpg-sign`, body carries the task-02 read-through outcome (all 6 checked locations: no change needed).
**Next pending task:** `62_ui_customization/01_config_settings.md`
.agents/reports/61_stale_ui_copy/61_stale_ui_copy__04_tests_and_commit.a1.validate
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 101 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2458 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK