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phase: 113_source_chip_quality
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All gates green — no defects found; this pass was verification only.

**Phase 113 final verification pass — report**

- Verified (no code changes needed): `select_documents_tiered` cited/related tiering + `select_documents` wrapper, `TurnPlan.related_docs`, `ChatDoneEvent.related` (additive, old payloads parse), `appendRelated` UI row (`.related-doc`, never `.source-chip`), done-frame + restore-path wiring, two settings with validators, `.env.example` entries
- `uv run pytest --cov=app --cov-report=term-missing` → 2422 passed, app/ coverage **99%** (>90% gate)
- `uv run pytest tests/e2e/test_source_chip_quality.py -v --no-cov` (isolated) → 2 passed
- Regression E2E `test_retrieval_quality.py` + `test_honest_deflection.py` + `test_chat_rag.py` + `test_sources_midstream_bug.py` → 17 passed
- `uv run ruff check . && uv run pyright` → clean (0 errors); `bash .agents/validate.sh` → "validation OK"

Completion criteria:
1. Single-doc question → exactly one `.source-chip` (E2E): ✅ passed
2. Weak 2nd doc only in de-emphasized related row, never `.source-chip` (unit + E2E): ✅ passed
3. Deflected turn → zero citation chips, weak hits in related row: ✅ passed
4. Full suite green, coverage >90%, isolated E2E green, lint/types clean: ✅ passed
5. `--no-gpg-sign` commit + phase dir move: left to harness per pass rules (task files already in `complete/`)

No deviations. Next pending phase: `114_embed_question_length`.
This commit is contained in:
ducoterra
2026-09-15 03:11:05 -04:00
parent 1374faf136
commit 97d663d16d
31 changed files with 2370 additions and 52 deletions
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.agents/phases/todo/113_source_chip_quality/00_phase.md → .agents/phases/complete/113_source_chip_quality/00_phase.md
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.agents/phases/todo/113_source_chip_quality/03_chip_filter_tests.md → .agents/phases/complete/113_source_chip_quality/03_chip_filter_tests.md
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.agents/reports/113_source_chip_quality/113_source_chip_quality__00_phase.a1.err
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All gates green — no defects found; this pass was verification only.
**Phase 113 final verification pass — report**
- Verified (no code changes needed): `select_documents_tiered` cited/related tiering + `select_documents` wrapper, `TurnPlan.related_docs`, `ChatDoneEvent.related` (additive, old payloads parse), `appendRelated` UI row (`.related-doc`, never `.source-chip`), done-frame + restore-path wiring, two settings with validators, `.env.example` entries
- `uv run pytest --cov=app --cov-report=term-missing` → 2422 passed, app/ coverage **99%** (>90% gate)
- `uv run pytest tests/e2e/test_source_chip_quality.py -v --no-cov` (isolated) → 2 passed
- Regression E2E `test_retrieval_quality.py` + `test_honest_deflection.py` + `test_chat_rag.py` + `test_sources_midstream_bug.py` → 17 passed
- `uv run ruff check . && uv run pyright` → clean (0 errors); `bash .agents/validate.sh` → "validation OK"
Completion criteria:
1. Single-doc question → exactly one `.source-chip` (E2E): ✅ passed
2. Weak 2nd doc only in de-emphasized related row, never `.source-chip` (unit + E2E): ✅ passed
3. Deflected turn → zero citation chips, weak hits in related row: ✅ passed
4. Full suite green, coverage >90%, isolated E2E green, lint/types clean: ✅ passed
5. `--no-gpg-sign` commit + phase dir move: left to harness per pass rules (task files already in `complete/`)
No deviations. Next pending phase: `114_embed_question_length`.
.agents/reports/113_source_chip_quality/113_source_chip_quality__00_phase.a1.validate
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=============================== warnings summary ===============================
.venv/lib64/python3.14/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain-of-reese/.venv/lib64/python3.14/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.14.7-final-0 ________________
Name Stmts Miss Cover
--------------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 52 0 100%
app/api/chat.py 217 1 99%
app/api/chats.py 110 0 100%
app/api/config.py 13 0 100%
app/api/doc_drafts.py 94 0 100%
app/api/docs.py 156 1 99%
app/api/git_sources.py 232 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 33 0 100%
app/api/sync.py 139 0 100%
app/api/tokens.py 40 0 100%
app/api/ui_settings.py 55 0 100%
app/config.py 203 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 45 0 100%
app/core/caching.py 124 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/errors.py 5 0 100%
app/core/logging.py 13 0 100%
app/core/rate_limit.py 44 0 100%
app/core/security_headers.py 20 0 100%
app/core/theming.py 38 0 100%
app/core/tokens.py 44 0 100%
app/db.py 22 0 100%
app/main.py 66 0 100%
app/models.py 128 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 317 1 99%
app/rag/archive_upload.py 134 0 100%
app/rag/chunker.py 206 4 98%
app/rag/doc_dates.py 18 0 100%
app/rag/folder_summaries.py 123 0 100%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 215 3 99%
app/rag/llm.py 243 1 99%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 88 0 100%
app/rag/retriever.py 192 3 98%
app/rag/scaffolding.py 55 0 100%
app/rag/source_removal.py 41 0 100%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 328 0 100%
--------------------------------------------------
TOTAL 4126 16 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
WARNING: there is a new pyright version available (v1.1.411 -> v1.1.414).
Please install the new version or set PYRIGHT_PYTHON_FORCE_VERSION to `latest`
validation OK
.agents/reports/113_source_chip_quality/113_source_chip_quality__01_usefulness_bar_sources.a1.err
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.agents/reports/113_source_chip_quality/113_source_chip_quality__01_usefulness_bar_sources.a1.md
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All gates green. Task complete.
**Implemented (task 01 — usefulness bar):**
- `app/config.py`: `source_usefulness_floor=0.35` (`BOR_SOURCE_USEFULNESS_FLOOR`, 0≤floor≤threshold) + `related_max_docs=2` (`BOR_RELATED_MAX_DOCS`, ≥0) + `.env.example` entries
- `app/rag/retriever.py`: `select_documents_tiered()` — rank-ordered distinct docs, best-chunk-cosine tracked; cited = bar-clearers ≤n (ceiling), related = next ranked non-cited ≤cap; `select_documents` = thin wrapper (floor 0.0 = no bar, legacy byte-identical)
- `app/api/chat.py`: `TurnPlan.related_docs`; `plan_turn` tiers both HIGH/LOW branches (deflected weak hits → related); done frame carries `related` deduped against cited (incl. agent-read); query_log/log line keep the full retrieval (A3)
- `app/schemas.py`: `ChatDoneEvent.related: list[SourceRef] = []` (additive; old frames parse)
- Tests: retriever tiering table (unit), `plan_turn` tier pins, settings validators, integration done-frame/related/dedupe/cap + back-compat pins
- **Defect fixes (pre-existing work):** phase-112 e2e boot defect (e2e app couldn't start: threshold 0.30 vs code-default lexical floor 0.35 → validator failure) fixed via mock-calibrated `BOR_LEXICAL_SUPPORT_FLOOR=0.15`; `get_settings()` lru_cache leak in the kafkabridge integration test hardened; one unit assertion updated to the new tier semantics
**Results:** `uv run pytest` → 2406 passed · `uv run pytest --cov=app` → TOTAL 99% (>90%) · `uv run ruff check .` → clean · `uv run pyright` → 0 errors · E2E in isolation (`--no-cov`): test_retrieval_quality 4✓, test_honest_deflection 4✓, test_chat_rag 3✓, test_sources_midstream_bug 6✓ (+4 more e2e suites spot-checked green)
**Notable decisions:** bar on best hit-chunk cosine (A2); related = rank-order continuation never overlapping cited; e2e keyword test's original first-chip assertion was actually correct (mock-server summary digests rank differently than the in-process fake) — my initial edit was reverted; test-env floors mock-calibrated (unit/int 0.02, e2e 0.15).
**Next pending task:** `02_secondary_related_docs_ui.md` (related-docs row in the chat UI).
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=============================== warnings summary ===============================
.venv/lib64/python3.14/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain-of-reese/.venv/lib64/python3.14/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.14.7-final-0 ________________
Name Stmts Miss Cover
--------------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 52 0 100%
app/api/chat.py 217 1 99%
app/api/chats.py 110 0 100%
app/api/config.py 13 0 100%
app/api/doc_drafts.py 94 0 100%
app/api/docs.py 156 1 99%
app/api/git_sources.py 232 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 33 0 100%
app/api/sync.py 139 0 100%
app/api/tokens.py 40 0 100%
app/api/ui_settings.py 55 0 100%
app/config.py 203 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 45 0 100%
app/core/caching.py 124 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/errors.py 5 0 100%
app/core/logging.py 13 0 100%
app/core/rate_limit.py 44 0 100%
app/core/security_headers.py 20 0 100%
app/core/theming.py 38 0 100%
app/core/tokens.py 44 0 100%
app/db.py 22 0 100%
app/main.py 66 0 100%
app/models.py 128 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 317 1 99%
app/rag/archive_upload.py 134 0 100%
app/rag/chunker.py 206 4 98%
app/rag/doc_dates.py 18 0 100%
app/rag/folder_summaries.py 123 0 100%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 215 3 99%
app/rag/llm.py 243 1 99%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 88 0 100%
app/rag/retriever.py 192 3 98%
app/rag/scaffolding.py 55 0 100%
app/rag/source_removal.py 41 0 100%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 328 0 100%
--------------------------------------------------
TOTAL 4126 16 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
WARNING: there is a new pyright version available (v1.1.411 -> v1.1.414).
Please install the new version or set PYRIGHT_PYTHON_FORCE_VERSION to `latest`
validation OK
.agents/reports/113_source_chip_quality/113_source_chip_quality__02_secondary_related_docs_ui.a1.err
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.agents/reports/113_source_chip_quality/113_source_chip_quality__02_secondary_related_docs_ui.a1.md
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All gates green. Final report:
**Implemented (task 02 — related-docs row, never a citation chip):**
- `app.js`: new `appendRelated(wrap, related)` next to `appendSources` — early-return on empty; `.msg-meta.related-docs` row (`role="list"`, `aria-label="Nearby docs, in case"`), small-caps label, one `.related-doc` link per doc (NOT `.source-chip`) with the same `documentUrl(...)` href + left-click → `openDocumentModal`, full path in `title`/`aria-label`
- Done-frame handler: `appendRelated(wrap, ev.related)` appended **last** (after tune/save/retry claimers — so a deflected turn's meta buttons get their own row, never the related row) + `related` persisted in the save payload (house optional-meta pattern); restore path (`renderStoredMessage`) re-renders it — pre-phase records no-op gracefully
- `styles.css`: `.related-docs-label` / `.related-doc` (dashed border, transparent, 0.7rem mono, AA ink-soft 8.6:1) / flat hover (no bg swap); palette vars only (phase-92 zero-literal)
- `tests/unit/test_source_chip_quality.py` (new): 10 source-pin tests (task 02 work item 3; task 03 extends this file)
**Results:** `uv run pytest` → 2416 passed · `--cov=app` → TOTAL 99% (>90%) · `uv run ruff check .` → clean · `uv run pyright` → 0 errors · E2E regressions in isolation: `test_retrieval_quality` 4✓, `test_honest_deflection` 4✓, `test_chat_rag` 3✓, `test_sources_midstream_bug` 6✓
**Decisions:** related row appends last so first-`.msg-meta` claimers can't join it (pinned); `related` only persisted when non-empty (`undefined` drops the key). No deviations; task 01's working-tree changes left intact.
**Next pending task:** `03_chip_filter_tests.md` (four-observed-shapes unit table + E2E chip-count assertions).
.agents/reports/113_source_chip_quality/113_source_chip_quality__02_secondary_related_docs_ui.a1.validate
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=============================== warnings summary ===============================
.venv/lib64/python3.14/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain-of-reese/.venv/lib64/python3.14/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.14.7-final-0 ________________
Name Stmts Miss Cover
--------------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 52 0 100%
app/api/chat.py 217 1 99%
app/api/chats.py 110 0 100%
app/api/config.py 13 0 100%
app/api/doc_drafts.py 94 0 100%
app/api/docs.py 156 1 99%
app/api/git_sources.py 232 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 33 0 100%
app/api/sync.py 139 0 100%
app/api/tokens.py 40 0 100%
app/api/ui_settings.py 55 0 100%
app/config.py 203 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 45 0 100%
app/core/caching.py 124 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/errors.py 5 0 100%
app/core/logging.py 13 0 100%
app/core/rate_limit.py 44 0 100%
app/core/security_headers.py 20 0 100%
app/core/theming.py 38 0 100%
app/core/tokens.py 44 0 100%
app/db.py 22 0 100%
app/main.py 66 0 100%
app/models.py 128 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 317 1 99%
app/rag/archive_upload.py 134 0 100%
app/rag/chunker.py 206 4 98%
app/rag/doc_dates.py 18 0 100%
app/rag/folder_summaries.py 123 0 100%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 215 3 99%
app/rag/llm.py 243 1 99%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 88 0 100%
app/rag/retriever.py 192 3 98%
app/rag/scaffolding.py 55 0 100%
app/rag/source_removal.py 41 0 100%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 328 0 100%
--------------------------------------------------
TOTAL 4126 16 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
WARNING: there is a new pyright version available (v1.1.411 -> v1.1.414).
Please install the new version or set PYRIGHT_PYTHON_FORCE_VERSION to `latest`
validation OK
.agents/reports/113_source_chip_quality/113_source_chip_quality__03_chip_filter_tests.a1.err
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.agents/reports/113_source_chip_quality/113_source_chip_quality__03_chip_filter_tests.a1.md
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Task 03 complete — all gates green.
**Implemented**
- `tests/unit/test_source_chip_quality.py` (extended): the four observed live shapes pinned under production calibration (0.62/0.35/0.35, top_n=2, cap=2) — shape 1 Mongolia (both docs weak: FTS hit uncorroborated stays LOW, `docs=[]`, related capped at 2), shape 2 validate.sh (1 cited + 1 related), shape 3 Nagraz/Byzin (same shape, different fixtures) at `plan_turn` level; shape 4 (meta/history) + shape 2 pinned on the actual done-frame wire via endpoint-level fakes (row-only deflected frame: `sources: []` + `related`; exactly-one-cited-ref frame); agent-read exemption (below-floor doc `read` via the tool joins `sources` last, excluded from `related`).
- `tests/e2e/test_source_chip_quality.py` (new): single-source question "What SSH aliases do I have?" → exactly one `.source-chip` (ssh_aliases.txt) + labeled `.related-docs` row with 2 `.related-doc` links, zero `.source-chip` in the row, full retrieval in `query_log` (A3); deflected "sourdough" question → zero `.source-chip`, weak hits row-only, `query_log` intact.
**Results**
- `uv run pytest tests/e2e/test_source_chip_quality.py -v --no-cov` → 2 passed (in isolation)
- Regression E2E (`test_retrieval_quality`, `test_honest_deflection`, `test_chat_rag`, `test_sources_midstream_bug`) → 17 passed
- `uv run pytest --cov=app --cov-report=term-missing` → 2422 passed, `app/` coverage **99%** (>90%)
- `uv run ruff check . && uv run pyright` → clean (0 errors)
**Notes**
- E2E tier shapes measured against the real pipeline (mock BoW embeddings, mock-calibrated floor 0.15) before pinning; fixture KB does produce the strong+weak two-tier shape live, so no docstring caveat was needed.
- No app code changes — task 03 is test-only; no defects found in prior tasks' work.
**Next pending task:** none in phase 113 — this was its final task (phase dir moves to `complete/` by the pipeline gate).
.agents/reports/113_source_chip_quality/113_source_chip_quality__03_chip_filter_tests.a1.validate
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=============================== warnings summary ===============================
.venv/lib64/python3.14/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain-of-reese/.venv/lib64/python3.14/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.14.7-final-0 ________________
Name Stmts Miss Cover
--------------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 52 0 100%
app/api/chat.py 217 1 99%
app/api/chats.py 110 0 100%
app/api/config.py 13 0 100%
app/api/doc_drafts.py 94 0 100%
app/api/docs.py 156 1 99%
app/api/git_sources.py 232 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 33 0 100%
app/api/sync.py 139 0 100%
app/api/tokens.py 40 0 100%
app/api/ui_settings.py 55 0 100%
app/config.py 203 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 45 0 100%
app/core/caching.py 124 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/errors.py 5 0 100%
app/core/logging.py 13 0 100%
app/core/rate_limit.py 44 0 100%
app/core/security_headers.py 20 0 100%
app/core/theming.py 38 0 100%
app/core/tokens.py 44 0 100%
app/db.py 22 0 100%
app/main.py 66 0 100%
app/models.py 128 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 317 1 99%
app/rag/archive_upload.py 134 0 100%
app/rag/chunker.py 206 4 98%
app/rag/doc_dates.py 18 0 100%
app/rag/folder_summaries.py 123 0 100%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 215 3 99%
app/rag/llm.py 243 1 99%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 88 0 100%
app/rag/retriever.py 192 3 98%
app/rag/scaffolding.py 55 0 100%
app/rag/source_removal.py 41 0 100%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 328 0 100%
--------------------------------------------------
TOTAL 4126 16 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
WARNING: there is a new pyright version available (v1.1.411 -> v1.1.414).
Please install the new version or set PYRIGHT_PYTHON_FORCE_VERSION to `latest`
validation OK