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phase: 163_pdf_strip_additive_selfheal
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All gates verified. Final report:

**Phase 163 — final verification pass (all 5 tasks already complete; verification-only run)**

- Verified D1–D4 in code: `page_strip_mode` column + migration 0027, `DocContent` absent-never-null rule keyed off `page_count`; `_persist_pdf_pages` render → atomic tmp+`os.replace` writes → stale-tail-last + `strip_class` stamp; `_regate_pdf_strip` on both unchanged paths (mirror gate, heal, repair, fail-soft, one INFO line only when acting); viewer mode branch + Text/Pages toggle (Text default, `aria-pressed`, no innerHTML, lazy imgs).
- `uv run pytest --cov=app --cov-report=term-missing` → **3796 tests, exit 0, coverage 99%** (>90%)
- `uv run pytest tests/e2e/test_pdf_strip_additive_selfheal.py -v --no-cov` → **5 passed** in isolation
- `test_pdf_pages_in_sources + test_pictorial_pdf + test_garbage_pdf` → 10 passed; `test_document_viewer(_context) + test_image_documents` → 20 passed
- `uv run ruff check .` clean; `uv run pyright` → 0 errors; alembic **0027 downgrade→upgrade CLI round-trip clean** (+ integration pins)
- Completion criteria: additive view w/ toggle ✅ · primary DOM byte-identity ✅ · write-first order/mid-write-failure/atomic pins ✅ · heal + repair E2E ✅ · zero vision/LLM on fast path (mock-captured) ✅ · non-qualifying payload byte-identity ✅ · docs pass ✅
- **Documentation**: README.md + AGENTS.md reviewed in full — the phase's updates are accurate; all config-table defaults cross-checked against `app/config.py` (no drift), every page route, script, and E2E command referenced exists, every `.env.example` var documented — **verified consistent, no changes needed**.
- Notable: live `Letumdei` repair is owner-runtime post-deploy per D5 (next production Sync self-heals; no live changes made); the modified `.agents/screenshots/doc_modal_scrollbar_1280.png` is an E2E-regenerated artifact left for the pipeline commit.
- **Next pending phase:** `164_chat_error_honesty`
This commit is contained in:
ducoterra
2026-10-07 13:57:30 -04:00
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All gates verified. Final report:
**Phase 163 — final verification pass (all 5 tasks already complete; verification-only run)**
- Verified D1–D4 in code: `page_strip_mode` column + migration 0027, `DocContent` absent-never-null rule keyed off `page_count`; `_persist_pdf_pages` render → atomic tmp+`os.replace` writes → stale-tail-last + `strip_class` stamp; `_regate_pdf_strip` on both unchanged paths (mirror gate, heal, repair, fail-soft, one INFO line only when acting); viewer mode branch + Text/Pages toggle (Text default, `aria-pressed`, no innerHTML, lazy imgs).
- `uv run pytest --cov=app --cov-report=term-missing` → **3796 tests, exit 0, coverage 99%** (>90%)
- `uv run pytest tests/e2e/test_pdf_strip_additive_selfheal.py -v --no-cov` → **5 passed** in isolation
- `test_pdf_pages_in_sources + test_pictorial_pdf + test_garbage_pdf` → 10 passed; `test_document_viewer(_context) + test_image_documents` → 20 passed
- `uv run ruff check .` clean; `uv run pyright` → 0 errors; alembic **0027 downgrade→upgrade CLI round-trip clean** (+ integration pins)
- Completion criteria: additive view w/ toggle ✅ · primary DOM byte-identity ✅ · write-first order/mid-write-failure/atomic pins ✅ · heal + repair E2E ✅ · zero vision/LLM on fast path (mock-captured) ✅ · non-qualifying payload byte-identity ✅ · docs pass ✅
- **Documentation**: README.md + AGENTS.md reviewed in full — the phase's updates are accurate; all config-table defaults cross-checked against `app/config.py` (no drift), every page route, script, and E2E command referenced exists, every `.env.example` var documented — **verified consistent, no changes needed**.
- Notable: live `Letumdei` repair is owner-runtime post-deploy per D5 (next production Sync self-heals; no live changes made); the modified `.agents/screenshots/doc_modal_scrollbar_1280.png` is an E2E-regenerated artifact left for the pipeline commit.
- **Next pending phase:** `164_chat_error_honesty`
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
--------------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 52 0 100%
app/api/chat.py 277 1 99%
app/api/chat_images.py 50 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 13 0 100%
app/api/doc_drafts.py 99 0 100%
app/api/docs.py 196 1 99%
app/api/git_sources.py 259 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 33 0 100%
app/api/sync.py 204 0 100%
app/api/tokens.py 40 0 100%
app/api/ui_settings.py 55 0 100%
app/config.py 266 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 45 0 100%
app/core/caching.py 124 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/errors.py 5 0 100%
app/core/logging.py 13 0 100%
app/core/rate_limit.py 44 0 100%
app/core/security_headers.py 20 0 100%
app/core/theming.py 38 0 100%
app/core/tokens.py 44 0 100%
app/db.py 22 0 100%
app/main.py 68 0 100%
app/models.py 136 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 454 1 99%
app/rag/archive_upload.py 134 0 100%
app/rag/chunker.py 220 4 98%
app/rag/doc_dates.py 18 0 100%
app/rag/folder_summaries.py 134 0 100%
app/rag/git_sources.py 77 0 100%
app/rag/importer.py 841 4 99%
app/rag/llm.py 246 1 99%
app/rag/md_images.py 63 0 100%
app/rag/overview.py 78 0 100%
app/rag/pdf.py 192 0 100%
app/rag/prompts.py 156 0 100%
app/rag/retriever.py 252 3 99%
app/rag/scaffolding.py 55 0 100%
app/rag/source_removal.py 41 0 100%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 58 0 100%
app/schemas.py 473 0 100%
--------------------------------------------------
TOTAL 5869 17 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
WARNING: there is a new pyright version available (v1.1.411 -> v1.1.414).
Please install the new version or set PYRIGHT_PYTHON_FORCE_VERSION to `latest`
validation OK
.agents/reports/163_pdf_strip_additive_selfheal/163_pdf_strip_additive_selfheal__01_schema_wire_strip_mode.a1.err
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All green. Final state:
**Implemented (task 01 — phase 163 D1, LOCKED A2/A3)**
- `app/models.py`: `Document.page_strip_mode` (VARCHAR(16), nullable, no server default, unindexed) right after `page_count`, docstringed as the strip CLASS (`primary` = fallback class, `additive` = pictorial class, NULL = no strip).
- `alembic/versions/0027_documents_page_strip_mode.py`: additive add/drop migration mirroring 0026; `upgrade head → downgrade -1 → upgrade head` round-trips clean (DB now at `0027 (head)`).
- `app/schemas.py`: `DocContent.page_strip_mode` + the `image_url`-style omission in the existing `model_serializer` (ABSENT, never `null`).
- `app/api/docs.py`: content payload passes `page_strip_mode=doc.page_strip_mode if doc.page_count is not None else None` — the whole strip block keys off `page_count`, so a stray mode never travels alone; `/pages/{n}` untouched; endpoint docstring + README "Which kind of strip it is (phase 163)" section updated. No AGENTS.md change (its viewer bullets are the final pass's).
- Tests: `tests/integration/test_migration_0027.py` (new, house pattern: contract + pre-phase `page_count=36`/mode-NULL backfill + ORM round-trip both classes + tested downgrade + round-trip), `tests/unit/test_models.py` (column contract + ORM defaults), `tests/unit/test_document_viewer.py` (model omission rule; endpoint: stamped primary/additive, pre-phase mode-NULL row → key absent with `page_urls` kept, stray mode + `page_count` NULL → neither key, exact non-qualifying key-set), `tests/unit/test_pdf_page_copies.py` (importer leaves the class unstamped until task 02), `tests/integration/test_docs_api.py` (`_seed_page_doc` gains `page_strip_mode`; real-DB class pins + never-alone + exact key set).
**Gates**
- `uv run pytest` → **3772 passed**; `uv run pytest --cov=app --cov-report=term-missing` → **3772 passed, app TOTAL 99%** (`app/schemas.py` 100%).
- `uv run ruff check .` → All checks passed; `uv run pyright` → 0 errors.
- `uv run alembic upgrade head && downgrade -1 && upgrade head` → clean, `current` = `0027 (head)`.
- E2E regression (isolation, `--no-cov`): `test_pdf_pages_in_sources.py` 4 passed, `test_pictorial_pdf.py`+`test_garbage_pdf.py` 6 passed, `test_smoke.py` 3 passed.
**Notes / decisions**
- Non-qualifying payloads stay byte-identical (both strip keys dropped when `page_count` is NULL); pre-phase rows serialize the class ABSENT and the viewer will read that as `primary` (task 04) — pinned, no data backfill.
- Column carries no CHECK constraint (purely additive per A13); the class values are enforced by the writers (tasks 02/03).
- No live-infrastructure changes needed for this task.
**Next pending task:** `163_pdf_strip_additive_selfheal/02_persist_write_first.md`.
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
--------------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 52 0 100%
app/api/chat.py 277 1 99%
app/api/chat_images.py 50 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 13 0 100%
app/api/doc_drafts.py 99 0 100%
app/api/docs.py 196 1 99%
app/api/git_sources.py 259 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 33 0 100%
app/api/sync.py 204 0 100%
app/api/tokens.py 40 0 100%
app/api/ui_settings.py 55 0 100%
app/config.py 266 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 45 0 100%
app/core/caching.py 124 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/errors.py 5 0 100%
app/core/logging.py 13 0 100%
app/core/rate_limit.py 44 0 100%
app/core/security_headers.py 20 0 100%
app/core/theming.py 38 0 100%
app/core/tokens.py 44 0 100%
app/db.py 22 0 100%
app/main.py 68 0 100%
app/models.py 136 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 454 1 99%
app/rag/archive_upload.py 134 0 100%
app/rag/chunker.py 220 4 98%
app/rag/doc_dates.py 18 0 100%
app/rag/folder_summaries.py 134 0 100%
app/rag/git_sources.py 77 0 100%
app/rag/importer.py 764 4 99%
app/rag/llm.py 246 1 99%
app/rag/md_images.py 63 0 100%
app/rag/overview.py 78 0 100%
app/rag/pdf.py 192 0 100%
app/rag/prompts.py 156 0 100%
app/rag/retriever.py 252 3 99%
app/rag/scaffolding.py 55 0 100%
app/rag/source_removal.py 41 0 100%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 58 0 100%
app/schemas.py 473 0 100%
--------------------------------------------------
TOTAL 5792 17 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
WARNING: there is a new pyright version available (v1.1.411 -> v1.1.414).
Please install the new version or set PYRIGHT_PYTHON_FORCE_VERSION to `latest`
validation OK
.agents/reports/163_pdf_strip_additive_selfheal/163_pdf_strip_additive_selfheal__02_persist_write_first.a1.err
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**Task 02 complete — `_persist_pdf_pages` write-first atomic persist + `strip_class` stamp (D2, A4/A7).**
- `app/rag/importer.py`: `_persist_pdf_pages` rewritten — render → per-file atomic write (`<name>.png.tmp` + `os.replace`, never a direct final-path write) → stale-tail delete LAST (only old-extent files not rewritten; a file about to be overwritten is never deleted); failure path unlinks this call's `.tmp`s and files it **created** (an overwritten copy keeps standing — deleting it would re-open the live-loss hole); `strip_class="fallback"|"pictorial"|None` replaces `eligible`, stamping `page_strip_mode` `primary`/`additive` exactly with `page_count`; the None arm and no-pages guard delete-then-null (helper reads the count); module + function docstrings carry the write-first rationale and the verbatim phase-148 truth table.
- Call site (`_index_pdf_file`): `strip_class = "fallback" if fallback_fired else ("pictorial" if pictorial_described else None)`; fail-soft handler nulls `page_strip_mode` too; comments updated.
- `tests/unit/test_pdf_page_copies.py`: re-cut task-01 pin → additive stamp; fallback→`primary`, ineligible/qualifier-loss/no-pages→NULL pins; new pins — order (event log: all `os.replace`s strictly before the first stale `unlink`, new bytes win), mid-write failure (prior 10-file set intact, zero `.tmp` orphans, count/mode NULL, doc indexed), atomic tmp+replace writer (every write to `.png.tmp`, `dst`/`src` pairing), best-effort stale-tail OSError branch; writer-exception test re-cut for tmp semantics.
Gates: `uv run pytest --cov=app --cov-report=term-missing` → **3776 passed, app coverage 99%** (importer 99%; remaining misses pre-existing); `uv run ruff check . && uv run pyright` → clean; E2E `test_pdf_pages_in_sources` (4), `test_pictorial_pdf` (3), `test_garbage_pdf` (3) all pass in isolation.
Docs: no further doc impact — README's phase-163 strip-class section (task 01) already covers the user-visible contract; deletion ordering is internal.
Notable decision: the partial-write cleanup keeps an **overwritten** final (keeps only newly-created files) — strictly satisfies "a failed call never leaves more files than before, and never removes a live copy" (LOCKED A4).
Next pending task: `163_pdf_strip_additive_selfheal/03_fast_path_regate.md`.
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
--------------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 52 0 100%
app/api/chat.py 277 1 99%
app/api/chat_images.py 50 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 13 0 100%
app/api/doc_drafts.py 99 0 100%
app/api/docs.py 196 1 99%
app/api/git_sources.py 259 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 33 0 100%
app/api/sync.py 204 0 100%
app/api/tokens.py 40 0 100%
app/api/ui_settings.py 55 0 100%
app/config.py 266 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 45 0 100%
app/core/caching.py 124 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/errors.py 5 0 100%
app/core/logging.py 13 0 100%
app/core/rate_limit.py 44 0 100%
app/core/security_headers.py 20 0 100%
app/core/theming.py 38 0 100%
app/core/tokens.py 44 0 100%
app/db.py 22 0 100%
app/main.py 68 0 100%
app/models.py 136 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 454 1 99%
app/rag/archive_upload.py 134 0 100%
app/rag/chunker.py 220 4 98%
app/rag/doc_dates.py 18 0 100%
app/rag/folder_summaries.py 134 0 100%
app/rag/git_sources.py 77 0 100%
app/rag/importer.py 788 4 99%
app/rag/llm.py 246 1 99%
app/rag/md_images.py 63 0 100%
app/rag/overview.py 78 0 100%
app/rag/pdf.py 192 0 100%
app/rag/prompts.py 156 0 100%
app/rag/retriever.py 252 3 99%
app/rag/scaffolding.py 55 0 100%
app/rag/source_removal.py 41 0 100%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 58 0 100%
app/schemas.py 473 0 100%
--------------------------------------------------
TOTAL 5816 17 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
WARNING: there is a new pyright version available (v1.1.411 -> v1.1.414).
Please install the new version or set PYRIGHT_PYTHON_FORCE_VERSION to `latest`
validation OK
.agents/reports/163_pdf_strip_additive_selfheal/163_pdf_strip_additive_selfheal__03_fast_path_regate.a1.err
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**Task 03 complete — all green.**
- **`app/rag/importer.py`**: new `_regate_pdf_strip(session, doc, *, full_path, llm, summary)` — mirrors the changed-path gate verbatim from current bytes + settings (phase-133 `is_usable_pdf_text` → phase-140 `pictorial_pages` + `pdf_pictorial` kill switch), **zero LLM/vision calls**; heals any missing `<id>-p{N}.png` (full re-render), stamps `page_strip_mode` (silent NULL→stamp, `mode old->new` on a set mode), clears a strip that no longer qualifies + deletes its copies, one greppable INFO only when it **acts**, whole body fail-soft (`re-gate failed` / `re-render produced no pages (state kept)` / `page_count drift a->b` warnings).
- `_unchanged_doc` gained `full_path: Path | None = None`; the **guarded** re-gate (`page_count` set + `.pdf`) runs at **both** exits (incl. the D1 manual-date return) and commits what it wrote; all 4 call sites (fast path, text/PDF/image content-digest hits) pass their `full_path`. Docstrings: the phase-147 "the copies persist" assumption is replaced (module doc + `_unchanged_doc` step 7 + `_index_pdf_file`).
- De-duplicated task 02's writer: extracted `_write_page_copies` (tmp + `os.replace`, orphan cleanup) and `_delete_stale_page_tail`; `_persist_pdf_pages` and the heal now share them (behavior unchanged).
- **Tests**: 11 new pins in `tests/unit/test_importer_unchanged_fast_path.py` — heal (pictorial, live NULL-mode), fallback heal (`primary`), healthy no-op (zero writes, zero re-gate log), mode re-stamp, repair arm, kill-switch clear, render-raise fail-soft, empty-render keeps row, count drift, content-digest-hit path, non-strip zero-parse guard (spy).
- `uv run pytest tests/unit/test_importer_unchanged_fast_path.py tests/unit/test_pdf_page_copies.py --no-cov` → exit 0 (24 + 15 tests); `uv run pytest --cov=app` → **3787 passed**, `app/rag/importer.py` **99%** (only pre-existing misses: 883, 3506-3507, 3793), TOTAL 99%; `uv run ruff check .` → clean; `uv run pyright` → **0 errors**; PDF E2E files pass in isolation (`test_pdf_pages_in_sources`, `test_pictorial_pdf`, `test_garbage_pdf`, `test_sync_changed_only`, exit 0).
- **Docs**: README — new "The strip repairs itself (phase 163)" viewer bullet, the "Updating the documents" fast-path qualifier, and the `BOR_PDF_PAGE_DIR` env-row note (dedup avoided). **AGENTS.md: no change** (per the phase overview its viewer bullet lands in the phase's final pass).
- **Notable**: (1) running all of `tests/e2e` in one process fails on a **pre-existing** design artifact — `tests/e2e/test_extensionless_import.py:70` mutates `os.environ["BOR_IMPORT_EXTENSIONS"]` at import, so other suites' 13-doc seed drops to 5; unaffected by this task, and the project's gate is per-file isolation (flagging for the owner/final pass). (2) Restored `.agents/screenshots/doc_modal_scrollbar_1280.png` (a tracked artifact my E2E runs overwrote) from HEAD so the phase commit stays clean.
- **Next pending task**: `163_pdf_strip_additive_selfheal/04_viewer_additive_toggle.md`.
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
--------------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 52 0 100%
app/api/chat.py 277 1 99%
app/api/chat_images.py 50 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 13 0 100%
app/api/doc_drafts.py 99 0 100%
app/api/docs.py 196 1 99%
app/api/git_sources.py 259 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 33 0 100%
app/api/sync.py 204 0 100%
app/api/tokens.py 40 0 100%
app/api/ui_settings.py 55 0 100%
app/config.py 266 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 45 0 100%
app/core/caching.py 124 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/errors.py 5 0 100%
app/core/logging.py 13 0 100%
app/core/rate_limit.py 44 0 100%
app/core/security_headers.py 20 0 100%
app/core/theming.py 38 0 100%
app/core/tokens.py 44 0 100%
app/db.py 22 0 100%
app/main.py 68 0 100%
app/models.py 136 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 454 1 99%
app/rag/archive_upload.py 134 0 100%
app/rag/chunker.py 220 4 98%
app/rag/doc_dates.py 18 0 100%
app/rag/folder_summaries.py 134 0 100%
app/rag/git_sources.py 77 0 100%
app/rag/importer.py 841 4 99%
app/rag/llm.py 246 1 99%
app/rag/md_images.py 63 0 100%
app/rag/overview.py 78 0 100%
app/rag/pdf.py 192 0 100%
app/rag/prompts.py 156 0 100%
app/rag/retriever.py 252 3 99%
app/rag/scaffolding.py 55 0 100%
app/rag/source_removal.py 41 0 100%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 58 0 100%
app/schemas.py 473 0 100%
--------------------------------------------------
TOTAL 5869 17 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
WARNING: there is a new pyright version available (v1.1.411 -> v1.1.414).
Please install the new version or set PYRIGHT_PYTHON_FORCE_VERSION to `latest`
validation OK
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**Task 04 complete — report**
**Implemented**
- `frontend/assets/document.js`: `renderDocument` now branches on `doc.page_strip_mode` — absent/`"primary"` keeps the phase-148 strip-only branch verbatim (byte-identical); `"additive"` renders the text doc (Summary panel + content) inside a `.doc-views` wrapper with a `Text`/`Pages` toggle (`role=group`, `aria-pressed`, Text default per LOCKED A6); strip mounts once, hidden via CSS `data-view` swap (lazy imgs never fetch while hidden, no refetch on flip-flop); never-build-HTML rule kept (module still has exactly one `innerHTML`); module docstring gained the phase-163 paragraph and re-scoped the phase-148 "INSTEAD of" sentence to the primary class.
- `frontend/assets/styles.css`: `.doc-view-toggle` ghost-pill pair (house `.auth-link`/`.share-chat-btn` idiom, chat-column cap, ≥44px targets, global 3px focus ring, pressed = brand fill + weight 700 — text + style, never color alone) + `.doc-views[data-view]` show/hide rules.
- New `tests/unit/test_viewer_additive_toggle.py`: 9 pins (source-contract + node behavioral runs of the real core: additive shape, primary/absent byte-identity, text-doc untouched, flip semantics with strip-node persistence, lazy imgs, XSS, CSS contract).
- Re-cut stale/newly-affected pins: `test_summary_edit_ui.py` (slot mount), `test_wide_column_css.py` (7th reading-column selector), E2E additive-view contracts in `test_pdf_pages_in_sources.py` and `test_pictorial_pdf.py` (text-first default, Pages flip reveals loaded strip, description rides the shown text).
**Gates**
- `uv run pytest` → **3796 passed**, 0 failed; coverage `app/` **99%** (>90%).
- `uv run ruff check .` → clean; `uv run pyright` → 0 errors.
- E2E in isolation: `test_pdf_pages_in_sources.py` 4✓, `test_pictorial_pdf.py` 3✓, `test_garbage_pdf.py` 3✓, plus `test_pdf_support.py` 6✓, `test_document_viewer.py` 8✓, `test_summary_in_viewer.py` 4✓.
**Docs**: README — phase-148 viewer bullet scope-fixed to "primary class only" (the phase-163 bullets from tasks 01–03 already describe the toggle); AGENTS.md — no doc impact (viewer bullet note is reserved for the phase final pass).
**Decisions**: additive E2E witnesses flipped from "descriptions not displayed" to "descriptions ride the shown text" (intended consequence of LOCKED A1/A6); toggle lives in a `.doc-views` wrapper only on additive docs — all other DOM untouched.
**Next pending task**: `163_pdf_strip_additive_selfheal/05_e2e_selfheal_pins.md`.
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
--------------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 52 0 100%
app/api/chat.py 277 1 99%
app/api/chat_images.py 50 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 13 0 100%
app/api/doc_drafts.py 99 0 100%
app/api/docs.py 196 1 99%
app/api/git_sources.py 259 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 33 0 100%
app/api/sync.py 204 0 100%
app/api/tokens.py 40 0 100%
app/api/ui_settings.py 55 0 100%
app/config.py 266 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 45 0 100%
app/core/caching.py 124 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/errors.py 5 0 100%
app/core/logging.py 13 0 100%
app/core/rate_limit.py 44 0 100%
app/core/security_headers.py 20 0 100%
app/core/theming.py 38 0 100%
app/core/tokens.py 44 0 100%
app/db.py 22 0 100%
app/main.py 68 0 100%
app/models.py 136 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 454 1 99%
app/rag/archive_upload.py 134 0 100%
app/rag/chunker.py 220 4 98%
app/rag/doc_dates.py 18 0 100%
app/rag/folder_summaries.py 134 0 100%
app/rag/git_sources.py 77 0 100%
app/rag/importer.py 841 4 99%
app/rag/llm.py 246 1 99%
app/rag/md_images.py 63 0 100%
app/rag/overview.py 78 0 100%
app/rag/pdf.py 192 0 100%
app/rag/prompts.py 156 0 100%
app/rag/retriever.py 252 3 99%
app/rag/scaffolding.py 55 0 100%
app/rag/source_removal.py 41 0 100%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 58 0 100%
app/schemas.py 473 0 100%
--------------------------------------------------
TOTAL 5869 17 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
WARNING: there is a new pyright version available (v1.1.411 -> v1.1.414).
Please install the new version or set PYRIGHT_PYTHON_FORCE_VERSION to `latest`
validation OK
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**Task 05 complete — report**
**Implemented**
- New `tests/e2e/test_pdf_strip_additive_selfheal.py` (5 tests, phase-163 A16 suite): fixture `strip_fixture` = `manual.pdf` (3 dense pages + 1 sparse map page → additive), `scanned.pdf` (XML-garbage layer → primary), `plain.pdf` (no strip); asserts 1 additive view (payload stamp, Text default, Pages flip loads all 4 imgs, flip-back keeps the mounted strip node — dataset-probed, zero refetch); 2 primary/plain DOM byte-identity incl. the key-omission payload pins; 3 heal (wipe copies → route 404 → one unchanged-byte sync → files restored, route 200, viewer complete); 4 repair (direct-DB stale `page_count`/mode + fake copies → cleared + deleted); 5 zero-LLM (mock `/v1/e2e/captured`: index burned both vision passes, heal/repair captured zero content calls — the sync prelude's fixed `ping` health probe is the one documented exemption).
- Docs pass: README verified in full (viewer + importer + env-table claims cross-checked against code; defaults script-audited vs `Settings` — no drift); AGENTS.md rule 5 gained the phase-163 viewer-class note.
**Gates** (all run this session, DB up)
- `uv run pytest tests/e2e/test_pdf_strip_additive_selfheal.py -v --no-cov` → **5 passed** in isolation.
- `test_pdf_pages_in_sources / test_pictorial_pdf / test_garbage_pdf / test_document_viewer / test_document_viewer_context / test_image_documents` → all exit 0, unmodified.
- `uv run pytest --cov=app --cov-report=term-missing` → **3796 passed**, coverage **99%** (>90%); `uv run ruff check .` clean; `uv run pyright` 0 errors; alembic **0027 downgrade→upgrade round-trip clean**.
**Docs**: README — no further edits needed (phase bullets from tasks 01–03 verified accurate); AGENTS.md — viewer-class note added.
**Decisions**: heal/repair zero-call pins exempt only `check_models`' `ping` (every sync pays it, predates the phase); anything else fails the pin. Pre-existing `.agents/screenshots/doc_modal_scrollbar_1280.png` modification (earlier E2E run) left for the pipeline commit.
**Next pending task**: `164_chat_error_honesty/01_caps_long_answer_chain.md`.
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
--------------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 52 0 100%
app/api/chat.py 277 1 99%
app/api/chat_images.py 50 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 13 0 100%
app/api/doc_drafts.py 99 0 100%
app/api/docs.py 196 1 99%
app/api/git_sources.py 259 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 33 0 100%
app/api/sync.py 204 0 100%
app/api/tokens.py 40 0 100%
app/api/ui_settings.py 55 0 100%
app/config.py 266 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 45 0 100%
app/core/caching.py 124 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/errors.py 5 0 100%
app/core/logging.py 13 0 100%
app/core/rate_limit.py 44 0 100%
app/core/security_headers.py 20 0 100%
app/core/theming.py 38 0 100%
app/core/tokens.py 44 0 100%
app/db.py 22 0 100%
app/main.py 68 0 100%
app/models.py 136 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 454 1 99%
app/rag/archive_upload.py 134 0 100%
app/rag/chunker.py 220 4 98%
app/rag/doc_dates.py 18 0 100%
app/rag/folder_summaries.py 134 0 100%
app/rag/git_sources.py 77 0 100%
app/rag/importer.py 841 4 99%
app/rag/llm.py 246 1 99%
app/rag/md_images.py 63 0 100%
app/rag/overview.py 78 0 100%
app/rag/pdf.py 192 0 100%
app/rag/prompts.py 156 0 100%
app/rag/retriever.py 252 3 99%
app/rag/scaffolding.py 55 0 100%
app/rag/source_removal.py 41 0 100%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 58 0 100%
app/schemas.py 473 0 100%
--------------------------------------------------
TOTAL 5869 17 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
WARNING: there is a new pyright version available (v1.1.411 -> v1.1.414).
Please install the new version or set PYRIGHT_PYTHON_FORCE_VERSION to `latest`
validation OK
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