feat(sources): real-time file progress for sync and upload — background upload with success toast

This commit is contained in:
2026-09-01 23:51:43 -04:00
parent cddc84c7db
commit 4677d86f49
103 changed files with 5914 additions and 456 deletions
@@ -0,0 +1,54 @@
# Phase 63 — Unambiguous Document Listing for Agent Tools
**Source:** Live troubleshooting report (2026-09-01) — the `brain-of-reese` agent at `https://brain.experimental.reeseapps.com/` cannot read documents because the `list_documents` tool output uses an ambiguous `source/path — title` format that the LLM cannot reliably parse when paths contain `/` characters.
**Story:** `.agent/user_stories/agent-document-tools.md` (phase 37, extended)
**Context:** The agent's grounded-turn loop uses two tools: `list_documents` (returns the catalog) and `read_document` (reads one document). The catalog output is formatted as `source/path — title` (one line per document), but when a file lives inside a subdirectory of its source, the output looks like `brain-of-reese-main/homelab/aws-route53.md — aws-route53`. The LLM cannot reliably determine where `source` ends and `path` begins because both contain `/` separators. The thinking trace shows the LLM cycling through multiple failed attempts, each time guessing a different split.
The fix changes the catalog format to unambiguous `source: X | path: Y | title: Z` lines and updates the tool descriptions to tell the LLM how to parse them.
## Objective
The agent can always extract the correct `(source, path)` pair from the `list_documents` output, regardless of how many `/` characters the path contains.
## Dependencies
- `62_ui_customization` (todo, preceding — functional: no code changes in this phase touch UI or config)
## Tasks
1. `01_agent_list_format.md` — change `list_catalog` output from `source/path — title` to `source: X | path: Y | title: Z`; update the `read_document` tool descriptions to reference the new format.
2. `02_mock_and_unit_tests.md` — update `tests/e2e/mock_llm.py::_catalog_docs` to parse the new format; update `tests/unit/test_agent.py` (the "No document at" refusal line is unchanged — it names the lookup failure, not the list format).
3. `03_e2e_document_tools.md` — validate that `tests/e2e/test_agent_document_tools.py` and `tests/e2e/test_agent_unlimited_tools.py` still pass (they assert on SSE frames and UI rendering, not on the catalog text format — the tool call `argument` field `source/path` is unchanged).
4. `04_docs.md` — update any inline documentation that references the old format.
## Testing & Quality
- Unit: `tests/unit/test_agent.py` — the "No document at" refusal message is unchanged (it reports the lookup failure, not the list format). The `_catalog_docs` mock parsing must produce identical `(source, path)` tuples for all existing test catalogs.
- Integration: `tests/integration/test_agent_tools.py` — `list_catalog` ordering assertions are unchanged (the function returns `[(source, path, title), ...]` tuples; only the string formatting in `_execute_tool` changes).
- E2E (mandatory, house rule): `tests/e2e/test_agent_document_tools.py` and `tests/e2e/test_agent_unlimited_tools.py` run in isolation — the SSE `argument` field (`source/path`) is unchanged; the mock's `_catalog_docs` parsing produces identical results; the tool lines and source chips render identically.
- Coverage: **>90%** on `app/` (validate.sh gate).
## Completion Criteria
- [ ] `list_catalog` output uses `source: X | path: Y | title: Z` format — verifiable by a unit test that patches `list_catalog` and checks the formatted string.
- [ ] The `read_document` tool descriptions tell the LLM to extract `source` and `path` from the `source:` / `path:` labels.
- [ ] `tests/e2e/mock_llm.py::_catalog_docs` parses the new format and produces identical `(source, path)` tuples for all existing test catalogs.
- [ ] `uv run pytest` green; coverage TOTAL >90%; `uv run ruff check . && uv run pyright` clean.
- [ ] `uv run pytest tests/e2e/test_agent_document_tools.py tests/e2e/test_agent_unlimited_tools.py -v --no-cov` green in isolation (DB up).
- [ ] Regression E2E suites green in isolation: `test_chat_api.py`, `test_sse_events.py`, `test_whole_document_context.py`.
- [ ] One `--no-gpg-sign` commit; phase dir moved to `.agent/phases/complete/` (`.agent/` stays untracked).
## Locked decisions
- **Owner-locked (2026-09-01, troubleshooting report, A1):** the new format uses `source: X | path: Y | title: Z` — one line per document, pipe-delimited fields, no ambiguity even with deeply nested paths.
- **Owner-locked (2026-09-01, troubleshooting report, A2):** the `read_document` tool descriptions are updated to reference the new format (tell the LLM how to parse `source:` and `path:` labels).
- **Owner-locked (2026-09-01, troubleshooting report, A3):** the SSE `argument` field (`source/path`) is unchanged — it is the tool call argument, not the list output. The frontend tool-line rendering is unchanged.
- **Owner-locked (2026-09-01, troubleshooting report, A4):** the "No document at …" refusal message is unchanged — it reports the lookup failure, not the list format.
## Commit
```bash
git add app/ tests/ && git commit --no-gpg-sign -m "fix(agent): unambiguous document listing format for LLM parsing"
```
@@ -0,0 +1,75 @@
# Task 01 — Change `list_catalog` output format + update tool descriptions
**Goal:** Make the `list_documents` catalog output unambiguous for LLM parsing, and update the `read_document` tool descriptions to tell the LLM how to extract `source` and `path`.
## Changes
### `app/rag/agent.py`
#### 1. Change `list_catalog` output format
In `_execute_tool`, the `list_documents` handler formats the catalog as:
```python
# BEFORE (ambiguous when path contains /)
listing = f"{len(rows)} documents:\n" + "\n".join(
f"{source}/{path} — {title}" for source, path, title in rows
)
```
Change to:
```python
# AFTER (unambiguous — each field is labeled)
listing = f"{len(rows)} documents:\n" + "\n".join(
f"source: {source} | path: {path} | title: {title}"
for source, path, title in rows
)
```
#### 2. Update `read_document` tool descriptions
In `AGENT_TOOLS`, update the `source` and `path` parameter descriptions to reference the new format:
```python
# BEFORE
"source": {
"description": (
"The document's source (a directory basename, e.g. 'Homelab')."
),
},
"path": {
"description": (
"The document's path relative to its source directory."
),
},
# AFTER
"source": {
"description": (
"The document's source, as shown after 'source: ' in the "
"list_documents output (e.g. 'Homelab' from "
"'source: Homelab | path: homelab/aws-route53.md')."
),
},
"path": {
"description": (
"The document's path, as shown after 'path: ' in the "
"list_documents output (e.g. 'homelab/aws-route53.md' from "
"'source: Homelab | path: homelab/aws-route53.md')."
),
},
```
### `app/rag/prompts.py`
No changes needed — the prompt text references the tool names but not the output format.
## Files changed
- `app/rag/agent.py` — `list_catalog` formatting + `AGENT_TOOLS` descriptions
## Verification
- `uv run pytest tests/unit/test_agent.py -v --no-cov` — the tool shape tests (`test_agent_tools_names_and_parameters`) check the description strings, so they must be updated to match.
- `uv run ruff check app/rag/agent.py && uv run pyright app/rag/agent.py` — lint + types clean.
@@ -0,0 +1,85 @@
# Task 02 — Update mock parsing + unit tests for the new format
**Goal:** Update `tests/e2e/mock_llm.py::_catalog_docs` to parse the new `source: X | path: Y | title: Z` format, and update `tests/unit/test_agent.py` to match the new tool descriptions.
## Changes
### `tests/e2e/mock_llm.py` — `_catalog_docs` function
The current parsing uses `head.rpartition("/")` on the `source/path` head:
```python
# BEFORE
def _catalog_docs(body: dict[str, Any]) -> list[tuple[str, str]]:
docs: list[tuple[str, str]] = []
for m in _messages(body):
if m.get("role") != "tool":
continue
content = str(m.get("content") or "")
if content.startswith(_READ_RESULT_PREFIX):
continue
for line in content.splitlines():
head = line.split(" — ", 1)[0].strip()
if "/" in head:
source, _, path = head.rpartition("/")
if source and path:
docs.append((source, path))
return docs
```
Change to parse the new labeled format:
```python
# AFTER
def _catalog_docs(body: dict[str, Any]) -> list[tuple[str, str]]:
docs: list[tuple[str, str]] = []
for m in _messages(body):
if m.get("role") != "tool":
continue
content = str(m.get("content") or "")
if content.startswith(_READ_RESULT_PREFIX):
continue
for line in content.splitlines():
# New format: "source: X | path: Y | title: Z"
if not line.startswith("source: "):
continue
parts = line.split(" | ", 2)
if len(parts) < 3:
continue
source = parts[0].removeprefix("source: ").strip()
path_part = parts[1]
if not path_part.startswith("path: "):
continue
path = path_part.removeprefix("path: ").strip()
if source and path:
docs.append((source, path))
return docs
```
### `tests/unit/test_agent.py` — tool description assertions
The test `test_agent_tools_names_and_parameters` asserts the exact description strings:
```python
# BEFORE (line ~109)
assert by_name["read_document"]["function"]["description"] == (
"Add the full content of one more indexed document to your context"
)
```
This assertion is about the function description (not parameter descriptions), so it stays the same. But the test file may have inline assertions about the `source` and `path` parameter descriptions — check and update if any exist.
### `tests/unit/test_agent.py` — refusal message
The refusal message `"No document at S/ghost.md — check the list_documents output."` is unchanged — it reports the lookup failure, not the list format. No changes needed here.
## Files changed
- `tests/e2e/mock_llm.py` — `_catalog_docs` parsing
- `tests/unit/test_agent.py` — only if inline assertions reference the old format (verify)
## Verification
- `uv run pytest tests/unit/test_agent.py -v --no-cov` — all agent unit tests pass.
- `uv run pytest tests/e2e/test_agent_document_tools.py -v --no-cov` — the mock's `_catalog_docs` must produce identical `(source, path)` tuples for the test catalogs.
- `uv run ruff check tests/ && uv run pyright tests/` — lint + types clean.
@@ -0,0 +1,44 @@
# Task 03 — E2E document tools validation
**Goal:** Run the E2E suites for agent document tools and verify they still pass with the new catalog format.
## What to verify
The E2E tests assert on:
1. **SSE frames** — the `argument` field of `tool` events is `source/path` (e.g., `"Deployments/example-record-file.json"`). This is the tool call argument, NOT the list output format. **Unchanged.**
2. **UI rendering** — tool lines show "Listing documents" and "Reading <source/path>". **Unchanged.**
3. **Source chips** — display `${s.source}/${s.path}`. **Unchanged.**
4. **Answer content** — the mock's deterministic answer quoting the read document. **Unchanged** (the mock reads the same `(source, path)` tuples from the catalog).
5. **Query log** — sources field stores `"source/path, source/path"`. **Unchanged.**
The only thing that changes is the **text of the catalog** that the mock parses. The mock's `_catalog_docs` function must produce identical `(source, path)` tuples for the test catalogs, which means the tool flow classification (`_tool_flow`) and the read step will work identically.
## Run commands
```bash
# DB must be up: podman compose up -d db
uv run pytest tests/e2e/test_agent_document_tools.py -v --no-cov
uv run pytest tests/e2e/test_agent_unlimited_tools.py -v --no-cov
```
## Regression suites to run
```bash
uv run pytest tests/e2e/test_chat_api.py -v --no-cov
uv run pytest tests/e2e/test_whole_document_context.py -v --no-cov
uv run pytest tests/e2e/test_sse_events.py -v --no-cov
```
## Expected outcome
All tests pass without modification (aside from the mock parsing change in task 02). The catalog text format is an internal detail of the agent loop — the tool call arguments, SSE frames, UI rendering, and answer content are all unchanged.
## If tests fail
1. Check that `_catalog_docs` produces the same `(source, path)` tuples as before for the test catalogs.
2. Verify the mock's `_tool_flow` classification still works (it calls `_catalog_docs`).
3. Check that the SSE `argument` field is still `source/path` (it should be — `_execute_tool` builds it from `call.arguments["source"] + "/" + call.arguments["path"]`, which is unchanged).
## Files changed
- None (verification only — all changes were in tasks 01 and 02)
@@ -0,0 +1,44 @@
# Task 04 — Update documentation
**Goal:** Update all documentation that references the old `source/path — title` catalog format to the new `source: X | path: Y | title: Z` format.
## Files to update
### `README.md` — Agent document tools section (~L168)
```markdown
# BEFORE
* **`list_documents`** — lists every indexed document, one
`source/path — title` line each (the same order as the Sources page);
# AFTER
* **`list_documents`** — lists every indexed document, one
`source: X | path: Y | title: Z` line each (the same order as the
Sources page);
```
### `.agent/user_stories/agent-document-tools.md` — Acceptance criteria (~L38)
```markdown
# BEFORE
3. `app/rag/agent.py`: the loop — budgets from
`BOR_AGENT_LIST_CALLS` / `BOR_AGENT_READ_CALLS` (default 1/1); the
`list_documents` tool returns the DB catalog
(`source/path — title` lines, `/api/docs` order);
# AFTER
3. `app/rag/agent.py`: the loop — budgets from
`BOR_AGENT_LIST_CALLS` / `BOR_AGENT_READ_CALLS` (default 1/1); the
`list_documents` tool returns the DB catalog
(`source: X | path: Y | title: Z` lines, `/api/docs` order);
```
## Verification
- `grep -n "source/path — title\|source/path - title" README.md .agent/user_stories/*.md` should return no results.
- `uv run ruff check README.md .agent/` — lint clean (markdown files are not linted by ruff, but the command should not error).
## Files changed
- `README.md` — Agent document tools section
- `.agent/user_stories/agent-document-tools.md` — Acceptance criteria item 3
@@ -0,0 +1,19 @@
All verification passes green. Phase 61 is fully complete — final verification pass only, no code changes needed.
**Phase 61 (stale_ui_copy) — final verification report**
Verified (all 4 task files already in `complete/`; no work remaining, no defects found):
- Chat page: meta description, empty-state sub, composer placeholder, and the 4 default chips in `app/config.py` match the locked (A1/A2) copy exactly
- KB page-sub (`sources.html`) reads the locked current-source-model text (git repos + local dirs + uploaded archives, Sync pulls/re-imports); git-sources placeholder is `https://github.com/you/your-repo.git` (A3)
- All 9 pages carry `<span class="footer-text">Powered by self-hosted models</span>` (1 each); `grep -rn "Reese's" frontend/` empty; only remaining "homelab" is the A3-exempt L176 code comment in `index.html`
- Tests: `tests/unit/test_stale_ui_copy.py` + `tests/e2e/test_stale_ui_copy.py` exist with real pins (body-text scan, DOM assertions)
Results:
- `uv run pytest --cov=app --cov-report=term-missing`: **1201 passed**, coverage TOTAL **99%** (>90% ✓)
- `uv run ruff check . && uv run pyright`: clean (0 errors)
- `uv run pytest tests/e2e/test_stale_ui_copy.py -v --no-cov`: **5 passed** in isolation (DB up)
- Regression E2E in isolation: `test_smoke` 3 ✓, `test_configurable_brand` 5 ✓, `test_header_consistency` 3 ✓, `test_dark_tech_theme` 6 ✓
- Commit `baefcde` `--no-gpg-sign` exists, staged paths only `app/ frontend/ tests/` ✓
Completion criteria: all 7 met (E2E body scan, KB page-sub, 9 footers, suite/coverage/lint, phase E2E, regression suites, single commit).
Next pending phase: **62_ui_customization**.
@@ -0,0 +1,71 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 47%]
........................................................................ [ 53%]
........................................................................ [ 59%]
........................................................................ [ 65%]
........................................................................ [ 71%]
........................................................................ [ 77%]
........................................................................ [ 83%]
........................................................................ [ 89%]
........................................................................ [ 95%]
................................................. [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 101 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2458 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,17 @@
**Task 01 complete — report**
Implemented:
- `frontend/index.html`: meta description, `.empty-state-sub`, and `#message-input` placeholder → locked neutral copy (A1); brand-embedding strings left untouched for the phase-39 brand layer.
- `app/config.py`: `suggestions` default → the four locked chips (A2); `BOR_SUGGESTIONS` override path unchanged.
- Defect fix (pre-existing — 3 `tests/integration/test_api.py` failures even on the pristine tree): the operator's local gitignored `.env` leaked into test apps via pydantic `env_file=".env"`. Made the test env hermetic — `tests/conftest.py` + `tests/e2e/conftest.py` now force `BOR_DOCS_REPO=""` and `BOR_SUGGESTIONS`=code default (derived from `Settings.model_fields` so it can't drift); `test_response_to_docs.py` "unconfigured" spawn forces empty docs repo (dotenv leak re-enabled the docs feature there too).
Results:
- `uv run pytest --cov=app` → 1193 passed; TOTAL 99% (>90%)
- `uv run ruff check .` → clean; `uv run pyright` → 0 errors
- `bash .agent/validate.sh` → validation OK
- `uv run pytest tests/e2e/test_smoke.py -v --no-cov` → 3 passed (validates the modified shared E2E server)
- Task grep criteria verified: `homelab` in `index.html` only at the L176 code comment (A3); no "deployment" text; one user-visible "Ask me anything"
Decisions: conftest changes are a required defect fix (suite was red before this task on this machine); no commit made (task 04 owns it).
Next pending: `02_sources_pages_copy.md` (KB page-sub + remaining page-subs + git-sources example URL).
@@ -0,0 +1,71 @@
........................................................................ [ 6%]
........................................................................ [ 12%]
........................................................................ [ 18%]
........................................................................ [ 24%]
........................................................................ [ 30%]
........................................................................ [ 36%]
........................................................................ [ 42%]
........................................................................ [ 48%]
........................................................................ [ 54%]
........................................................................ [ 60%]
........................................................................ [ 66%]
........................................................................ [ 72%]
........................................................................ [ 78%]
........................................................................ [ 84%]
........................................................................ [ 90%]
........................................................................ [ 96%]
......................................... [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 101 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2458 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,19 @@
All gates green. Task 02 complete.
**Implemented**
- `frontend/sources.html` KB page-sub → locked (A1) copy: "Every file indexed from your configured sources — git repositories, local directories, and uploaded archives. Press **Sync sources** to pull the latest and re-import."
- `frontend/git-sources.html` example placeholder → `https://github.com/you/your-repo.git` (A3)
- `tests/unit/test_sync_button.py` — updated the stale copy-pin (it asserted the retired "clone the repos and re-import") to pin the new locked copy incl. the source-model wording
- Verification read-through, all **no change** (accurate today): `sources.js` sync result/error strings (server-driven, incl. "no sources configured (git or local)" from `app/api/sync.py:190`); page-subs in `tuning.html`, `history.html`, `doc-edit.html`, `git-sources.html`; `#sources-gate` copy (verified `GET /api/docs` admin-only, `GET /api/documents/content` public)
**Results**
- `uv run pytest --cov=app --cov-report=term` → 1193 passed, TOTAL **99%** (>90%)
- `uv run ruff check .` → clean; `uv run pyright` → 0 errors
- `uv run pytest tests/e2e/test_smoke.py -v --no-cov` → 3 passed; `tests/e2e/test_header_consistency.py -v --no-cov` → 3 passed
- `grep "Homelab\|Deployments" frontend/sources.html` and `grep "homelab" frontend/git-sources.html` both empty; only A3-exempt comments remain
**Decisions**
- One pre-existing test pinned the retired copy (defect in previously completed work) — updated to the locked replacement rather than the HTML reverted
- No commit made: the phase's single atomic commit belongs to task 04
**Next pending task:** `.agent/phases/todo/61_stale_ui_copy/03_footer_defaults.md`
@@ -0,0 +1,71 @@
........................................................................ [ 6%]
........................................................................ [ 12%]
........................................................................ [ 18%]
........................................................................ [ 24%]
........................................................................ [ 30%]
........................................................................ [ 36%]
........................................................................ [ 42%]
........................................................................ [ 48%]
........................................................................ [ 54%]
........................................................................ [ 60%]
........................................................................ [ 66%]
........................................................................ [ 72%]
........................................................................ [ 78%]
........................................................................ [ 84%]
........................................................................ [ 90%]
........................................................................ [ 96%]
......................................... [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 101 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2458 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,14 @@
Task 03 is complete and green.
**Task 03 — Neutral footer default on all 9 pages (`.footer-text` hook)**
- Replaced `<span>Powered by Reese's self-hosted models</span>` → `<span class="footer-text">Powered by self-hosted models</span>` on all 9 pages (`index`, `sources`, `tuning`, `document`, `git-sources`, `history`, `login`, `shared`, `doc-edit`), exactly at the audited line numbers; `.footer-version` siblings untouched
- Verified `grep -c 'class="footer-text"' frontend/*.html` → 1 per file, 9 total; `grep -rn "Reese's" frontend/` → empty
- No CSS/JS changes — the class is a selector-only hook for phase 62's `BOR_FOOTER_TEXT`; no test pinned the old footer text
- Tests: `uv run pytest --cov=app` → 1193 passed (exit 0), coverage TOTAL **99%** (>90% gate); `uv run ruff check . && uv run pyright` → clean
- Brand layer unaffected: `uv run pytest tests/unit/test_frontend_brand.py tests/e2e/test_configurable_brand.py -v --no-cov` → 15 passed (DB up, so run now rather than deferred to task 04)
- The 9-page unit pin is deliberately deferred to task 04 per the task file; no new tests added in this task (no logic changes)
- Not committed — the single atomic phase commit is task 04's job; working tree carries tasks 01–03 changes
- Note: `.agent/PLAN.md` is absent from the repo; owner-locked copy was taken from the phase's `00_phase.md` locked decisions (A1)
**Next pending task:** `.agent/phases/todo/61_stale_ui_copy/04_tests_and_commit.md`
@@ -0,0 +1,71 @@
........................................................................ [ 6%]
........................................................................ [ 12%]
........................................................................ [ 18%]
........................................................................ [ 24%]
........................................................................ [ 30%]
........................................................................ [ 36%]
........................................................................ [ 42%]
........................................................................ [ 48%]
........................................................................ [ 54%]
........................................................................ [ 60%]
........................................................................ [ 66%]
........................................................................ [ 72%]
........................................................................ [ 78%]
........................................................................ [ 84%]
........................................................................ [ 90%]
........................................................................ [ 96%]
......................................... [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 101 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2458 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,17 @@
Task 04 complete. Report:
**Implemented**
- `tests/unit/test_stale_ui_copy.py` (8 tests, house text-pin pattern): old homelab-era strings GONE from `index.html`/`sources.html`/`git-sources.html`; locked A1 strings present exactly once; `class="footer-text"` + neutral footer on all 9 pages; A2 chips in `app/config.py` in order; old chips absent from all of `app/` + `frontend/` (retired, not relocated).
- `tests/e2e/test_stale_ui_copy.py` (5 tests, shared conftest server, DB up): chat placeholder/meta/footer pins, full body scan for `homelab`/`deployment`, A2 chip list in order, sources `.page-sub` (no Homelab/Deployments, has "configured sources"), git-sources `#git-source-url` placeholder (A3) — all from the rendered DOM.
**Verification (all green)**
- `uv run pytest --cov=app` → 1201 passed, coverage TOTAL **99%** (>90% gate)
- `uv run pytest tests/e2e/test_stale_ui_copy.py -v --no-cov` → 5 passed (isolation, DB up)
- Regression E2E in isolation: `test_smoke.py` 3 ✓, `test_configurable_brand.py` 5 ✓, `test_header_consistency.py` 3 ✓, `test_dark_tech_theme.py` 6 ✓
- `uv run ruff check . && uv run pyright` → clean
**Decisions/deviations**
- Old git example URL also pinned (A3, "where they lived"); old-chip absence scan scoped to `app/`+`frontend/` (a repo-wide scan would hit the pin file itself).
- Atomic commit `baefcde` on `main` — staged `frontend/ tests/ app/` only, `--no-gpg-sign`, body carries the task-02 read-through outcome (all 6 checked locations: no change needed).
**Next pending task:** `62_ui_customization/01_config_settings.md`
@@ -0,0 +1,71 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 47%]
........................................................................ [ 53%]
........................................................................ [ 59%]
........................................................................ [ 65%]
........................................................................ [ 71%]
........................................................................ [ 77%]
........................................................................ [ 83%]
........................................................................ [ 89%]
........................................................................ [ 95%]
................................................. [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 101 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2458 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,14 @@
All completion criteria verified. Report:
**Phase 62 — UI Customization: final verification pass (all tasks already complete, commit `c738105` present)**
- Verified implementation: 3 new `Settings` fields + fail-loud `theme` validator, six-key `/api/config`, `brand.js` placeholder/footer/theme-link passes, `themes/indigo.css` + README, Containerfile L29 `cp -r ./assets/themes`, `.env.example` + README docs.
- Live spot-checks: default `/api/config` = exactly the six keys with phase-61 defaults; `/assets/themes/indigo.css` served 200 from dev static dir; `../evil.css`, `a/b.css`, `INDIGO.CSS`, `indigo` all refused at startup, each naming the value.
- `uv run pytest --cov=app` — all green; **coverage TOTAL 99%** (>90% gate).
- `uv run ruff check . && uv run pyright` — clean (0 errors).
- `uv run pytest tests/e2e/test_ui_customization.py -v --no-cov` — **5 passed** in isolation (DB up).
- Regression E2E in isolation: `test_configurable_brand` 5✓, `test_stale_ui_copy` 5✓, `test_smoke` 3✓, `test_dark_tech_theme` 6✓.
- Commit criterion: single `--no-gpg-sign` commit `c738105 feat(web): customizable placeholder, footer text, and color theme via BOR_* env vars` (stages only `app/ frontend/ tests/ .env.example README.md Containerfile`); `.agent/` phase files already filed under `complete/` by the harness.
- All 9 completion criteria: **met**. No defects found; no fixes needed.
- Note: `.agent/PLAN.md` referenced by AGENTS.md does not exist in the repo — verified against the phase overview's locked decisions (A4–A7), all honored.
- Next pending phase: **`63_unambiguous_document_listing`**.
@@ -0,0 +1,71 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 47%]
........................................................................ [ 53%]
........................................................................ [ 59%]
........................................................................ [ 65%]
........................................................................ [ 70%]
........................................................................ [ 76%]
........................................................................ [ 82%]
........................................................................ [ 88%]
........................................................................ [ 94%]
.................................................................. [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2469 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,19 @@
All green. Task complete — final verification summary:
**Implemented (task 01 — Settings + `/api/config` keys + validator):**
- `app/config.py`: `input_placeholder` / `footer_text` / `theme` (phase-61 neutral defaults) + `theme` field_validator — empty ok, bare `^[a-z0-9_-]+\.css$` only, malformed fails startup naming the value (phase-56 style)
- `app/api/config.py`: `GET /api/config` now returns exactly the six locked keys (values verbatim, same public posture)
- Contract tests moved to six keys: `tests/integration/test_api.py` (both key-set tests + new `test_config_serves_ui_customization_overrides` + default-value pins), `tests/e2e/test_configurable_brand.py` (both instances)
- Unit pins: `tests/unit/test_config.py` — validator accept/reject cases (each rejection names the value), env-override + `BOR_THEME=../evil.css` startup failure
**Test / lint / coverage results:**
- `uv run pytest` → **1211 passed**
- `uv run pytest --cov=app --cov-report=term` → **TOTAL 99%** (>90% gate)
- `uv run ruff check .` → clean · `uv run pyright` → 0 errors
- `bash .agent/validate.sh` → "validation OK" · e2e file collects (5 tests; run lands in task 05)
**Notable decisions:**
- Also updated `tests/unit/test_save_as_doc_button.py` L54 key-set pin (not in the task's inventory — suite would go red without it) and added the phase-61-style `.env`-leak guard for the three new vars in `tests/conftest.py`
- No commit made — the phase's single atomic commit belongs to task 05
**Next pending task:** `02_brand_layer_customization.md` (brand.js applies placeholder/footer/theme from the same boot fetch)
@@ -0,0 +1,71 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 47%]
........................................................................ [ 53%]
........................................................................ [ 59%]
........................................................................ [ 65%]
........................................................................ [ 71%]
........................................................................ [ 77%]
........................................................................ [ 83%]
........................................................................ [ 89%]
........................................................................ [ 95%]
........................................................... [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2469 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,23 @@
Task 02 complete. All gates green.
**Implemented**
- `frontend/assets/brand.js`: the three phase-62 keys apply from the SAME settled-config `.then` (no second fetch), placed after the app_name block and independent of it (the name passes are now wrapped in `if (name)` — behavior byte-identical to the old early-return):
- `input_placeholder` → `#message-input` placeholder (null-guard no-op off the chat page)
- `footer_text` → every `.footer-text` node via `textContent` (no markup injection)
- `theme` → `<link id="theme-override" href="/assets/themes/<name>">` inserted immediately after the `styles.css` link (cascade wins), idempotent via `#theme-override`, A5 degradation: `onerror` → `console.warn`, built-in theme stands
- Header contract comment: new "Phase 62 (owner-locked 2026-09-01, TODO L3)" items 5–7 + updated no-op property (all 4 env vars unset ⇒ byte-identical)
- `tests/unit/test_frontend_brand.py`: new pin `test_brand_js_applies_phase_62_customization_from_the_same_fetch` — single-fetch marker, all three application markers, empty-skip guards, phase-62-after-app_name ordering, app_name default literal still holds
- Existing app_name passes 1–4 and `BOR_DOCS_REPO_CONFIGURED` logic untouched (re-indent only)
**Results**
- `uv run pytest` → 1212 passed
- `uv run pytest --cov=app --cov-report=term-missing` → TOTAL 99% (>90%)
- `uv run ruff check . && uv run pyright` → clean (0 errors)
- `bash .agent/validate.sh` → validation OK
- `node --check frontend/assets/brand.js` → syntax OK
**Decisions**
- Keyed the empty-skip guards on `typeof … === "string"` + truthiness, so a fetch failure (`cfg` null) is also a clean no-op (house style: page never breaks).
- No defects found in prior work — baseline was green before my changes.
**Next pending task:** `.agent/phases/todo/62_ui_customization/03_theme_assets.md`
@@ -0,0 +1,71 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 47%]
........................................................................ [ 53%]
........................................................................ [ 59%]
........................................................................ [ 65%]
........................................................................ [ 71%]
........................................................................ [ 77%]
........................................................................ [ 83%]
........................................................................ [ 89%]
........................................................................ [ 95%]
............................................................ [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2469 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,21 @@
All done and green. Final report:
**Implemented (task 03 — theme assets)**
- `frontend/assets/themes/indigo.css` — WCAG-AA dark indigo/slate theme, single `:root` block, exactly the 8 identity overrides (semantic accent/ok/err untouched)
- `frontend/assets/themes/README.md` — authoring guide (load path, variable table w/ built-in refs, filename regex, 4.5:1 bar, never-white-on-brand trap, A7 deployment)
- `Containerfile` — `&& cp -r ./assets/themes /out/assets/themes \` added in stage 1, after the styles.css minify (line 29)
- `tests/unit/test_themes.py` — 6 new pins: files exist, single leading `:root` block + nothing else, exactly the 8 locked overrides, 5 identity-pair ratios ≥4.5:1 computed from the file's own hex values, Containerfile cp line (position + no esbuild), guide contract markers
**Test / lint / coverage**
- `uv run pytest --cov=app --cov-report=term -q` → rc=0, 1218 tests, TOTAL **99%** (>90%)
- `uv run ruff check .` → All checks passed · `uv run pyright` → 0 errors
- `uv run pytest tests/unit/test_themes.py tests/integration/test_containerfile_assets.py -v --no-cov` → 12 passed
- Ratios (WCAG calc): ink/bg 15.84 · ink/surface 14.71 · ink-soft/surface 8.27 · bg-on-brand 6.46 · brand-ink/surface 11.99 — all ≥4.5:1
- Dev sanity: `BOR_THEME=indigo.css` → `GET /assets/themes/indigo.css` 200, `/api/config` theme="indigo.css", served HTML has 0 theme refs; default env → theme="", built-in `--brand: #f43f5e` stands (opt-in via env var, no dir scanning)
**Decisions / notes**
- Task's comment ratios were slightly off (14.6/8.2/6.4/11.9); wrote the computed values (14.7/8.3/6.5/12.0) — no palette values changed
- Required grep spot-check: `f43f5e|#f0e6e6|#0f0a0a` matches only the `:root` block (L9/11/14) + one comment (L1271) as expected; broader scan found decorative `rgb()` literals (bg grid, glow spots, `.send-btn` steps) — noted, not refactored per task
- Commit deferred to task 05's atomic phase commit (per phase plan)
**Next pending task:** `.agent/phases/todo/62_ui_customization/04_docs.md`
@@ -0,0 +1,71 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 47%]
........................................................................ [ 53%]
........................................................................ [ 59%]
........................................................................ [ 65%]
........................................................................ [ 70%]
........................................................................ [ 76%]
........................................................................ [ 82%]
........................................................................ [ 88%]
........................................................................ [ 94%]
.................................................................. [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2469 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,12 @@
All gates green. Task complete.
**Report**
- `.env.example` — added the three commented vars (`BOR_INPUT_PLACEHOLDER`, `BOR_FOOTER_TEXT`, `BOR_THEME`) in the `# --- App ---` block directly after the `BOR_APP_NAME` line, task's exact text/defaults, phase-cited.
- `README.md` env table — three rows added immediately after the `BOR_APP_NAME` row (what it affects, default, unset ⇒ no-op contract; `BOR_THEME` row documents the startup validator regex + missing-file degradation).
- `README.md` — new `### Customizing the look` subsection (4 sentences) placed at the end of "Configuration reference", directly **below** the env table, before "## Troubleshooting" — mirrors the house pattern of `###` feature subsections under a parent `##`; links to `frontend/assets/themes/README.md` (verified exists, link resolves) and names `indigo.css` as the example.
- No code changes (task is docs-only, per spec).
- Tests/lint: `uv run pytest` → 1218 passed; `uv run pytest --cov=app --cov-report=term-missing` → TOTAL **99%** (>90% gate); `uv run ruff check .` → all checks passed; `uv run pyright` → 0 errors.
- No commit made — the phase's single atomic commit is defined in task 05 (harness/handoff per phase overview).
Next pending task: `.agent/phases/todo/62_ui_customization/05_e2e_customization.md` (E2E suite + regression suites + atomic commit).
@@ -0,0 +1,71 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 47%]
........................................................................ [ 53%]
........................................................................ [ 59%]
........................................................................ [ 65%]
........................................................................ [ 70%]
........................................................................ [ 76%]
........................................................................ [ 82%]
........................................................................ [ 88%]
........................................................................ [ 94%]
.................................................................. [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2469 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,16 @@
All gates green and the atomic commit landed. Final report:
## Phase 62 / Task 05 — complete
**Implemented**
- `tests/e2e/test_ui_customization.py` — 5 mapped tests: `/api/config` six-key overrides + dev static serving of the theme; chat page custom placeholder/footer/`link#theme-override` + computed `--brand` `#818cf8`; multi-page footer (login, no composer); default server byte-identical (settled-fetch wait before the absence assert); malformed `BOR_THEME="../evil.css"` refuses boot via real uvicorn subprocess, stderr names the value. Own instance on `APP_PORT+2`, brand suite's env-block pattern.
- **Defect fix (task 02 work):** the phase-33/54 cache-bust rewrite serves `styles.css?v=<token>`, so brand.js's `el.href.endsWith("styles.css")` never matched and the theme link was never inserted — now matches the raw attribute path with query/fragment stripped; unit pin added for the exact regression.
- E2E conftest hardening: shared `app_server` pins the three new `BOR_` vars to code defaults (same leak-class fix as phase 61).
**Results**
- `uv run pytest tests/e2e/test_ui_customization.py -v --no-cov` → 5 passed (isolation, DB up)
- Regressions in isolation: `test_configurable_brand` 5✓, `test_stale_ui_copy` 5✓, `test_smoke` 3✓, `test_dark_tech_theme` 6✓
- `.agent/validate.sh` → unit+integration green, coverage TOTAL **99%** (>90%), ruff clean, pyright 0 errors
- Commit `c738105` on `main`, staged exactly `app/ frontend/ tests/ .env.example README.md Containerfile`, `--no-gpg-sign`
**Decisions:** `.agent/` left unstaged per task file (harness moves the phase dir). Next pending: `63_unambiguous_document_listing/01` (or the harness's queue order).
@@ -0,0 +1,71 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 47%]
........................................................................ [ 53%]
........................................................................ [ 59%]
........................................................................ [ 65%]
........................................................................ [ 70%]
........................................................................ [ 76%]
........................................................................ [ 82%]
........................................................................ [ 88%]
........................................................................ [ 94%]
.................................................................. [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2469 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,17 @@
All verification complete. The one remaining `source/path —` match is an explanatory comment in a test describing the historical bug (introduced by this phase's own commit) — not stale.
**Phase 63 — Final verification pass: ALL GREEN** (all 4 tasks already in `complete/`; no code changes needed)
- Verified `app/rag/agent.py`: `_execute_tool` emits `source: X | path: Y | title: Z` lines; `AGENT_TOOLS` `read_document` param descriptions reference the `source:`/`path:` labels; "No document at …" refusal unchanged
- Verified `tests/e2e/mock_llm.py::_catalog_docs` parses the new format via labeled-field regex; README + user story updated to new format; no stale old-format references remain
- `uv run pytest --cov=app --cov-report=term-missing` → **1219 passed**, TOTAL coverage **99%** (>90% gate)
- `uv run ruff check . && uv run pyright` → **All checks passed / 0 errors**
- `uv run pytest tests/e2e/test_agent_document_tools.py tests/e2e/test_agent_unlimited_tools.py -v --no-cov` → **8 passed** (DB up)
- Regression in isolation: `test_whole_document_context.py` **3 passed**; `tests/integration/test_chat_api.py` **17 passed**; `tests/unit/test_sse_events.py` **12 passed**; `tests/integration/test_agent_tools.py` **4 passed**
- Commit `15a16a8 fix(agent): unambiguous document listing format for LLM parsing` already present (`--no-gpg-sign`); harness has moved task files to `complete/`
Completion criteria: (1) new format + unit test — ✓ (2) tool descriptions — ✓ (3) mock parsing — ✓ (4) pytest/coverage/lint — ✓ (5) E2E document tools — ✓ (6) regression suites — ✓ (7) commit + phase move — ✓ (commit exists; `00_phase.md` move handled by harness)
Deviation: `test_chat_api.py`/`test_sse_events.py` don't exist under `tests/e2e/`; ran their actual locations (integration/unit) in isolation — all green.
Next pending phase: none — `todo/` holds only phase 63 itself.
@@ -0,0 +1,71 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 47%]
........................................................................ [ 53%]
........................................................................ [ 59%]
........................................................................ [ 64%]
........................................................................ [ 70%]
........................................................................ [ 76%]
........................................................................ [ 82%]
........................................................................ [ 88%]
........................................................................ [ 94%]
................................................................... [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2469 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,11 @@
**Task 01 complete — report**
- `app/rag/agent.py`: `list_documents` output now `source: X | path: Y | title: Z` (labeled, pipe-delimited — owner-locked A1); `read_document` `source`/`path` param descriptions now point the LLM at the `source:`/`path:` labels (A2, verbatim from task file); `list_documents` tool description + module docstring updated to match the new format (old wording would have misdescribed the output). "No document at …" refusal and SSE `argument` unchanged (A3/A4).
- `tests/unit/test_agent.py`: tool-shape test now asserts the new param descriptions; all three listing-format assertions updated.
- `tests/unit/test_mock_tool_flow.py`: `CATALOG_*` wire fixtures updated to the new format (they must stay byte-identical to `agent.py` output).
- Deviation: `tests/e2e/mock_llm.py::_catalog_docs` (nominally task 02) was pulled into this task — the old `rsplit("/", 1)` parse would have mis-read the new lines and broken the phase's mandatory E2E gate; now regex-parses the labeled fields, producing identical `(source, path)` tuples (verified round-trip incl. the `brain-of-reese-main/homelab/aws-route53.md` case from the bug report).
- `uv run pytest --cov=app` → 1218 passed, TOTAL coverage **99%** (>90%)
- `uv run ruff check . && uv run pyright` → clean (0 errors)
- `uv run pytest tests/e2e/test_agent_document_tools.py tests/e2e/test_agent_unlimited_tools.py -v --no-cov` → 8 passed (DB up); regression `test_whole_document_context.py` → 3 passed. (`test_chat_api.py`/`test_sse_events.py` listed in the phase don't exist in this repo.)
- No commit made — the phase (tasks 02–04 remaining) gets one atomic commit at phase completion per AGENTS.md rule 8.
- Next pending task: `63_unambiguous_document_listing/02_mock_and_unit_tests.md` (its mock/unit work is already done here — expect verification only).
@@ -0,0 +1,71 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 47%]
........................................................................ [ 53%]
........................................................................ [ 59%]
........................................................................ [ 65%]
........................................................................ [ 70%]
........................................................................ [ 76%]
........................................................................ [ 82%]
........................................................................ [ 88%]
........................................................................ [ 94%]
.................................................................. [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2469 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,19 @@
All gates green. Task 02 complete.
**Task 02 report — mock + unit tests for the new catalog format**
- **State found:** task 01's session had already applied the task-02 code (noted as a deviation in its report); this session verified it end-to-end and closed the one test gap.
- `tests/e2e/mock_llm.py::_catalog_docs` — verified: regex-parses the labeled `source: X | path: Y | title: Z` lines; produces identical `(source, path)` tuples for all test catalogs.
- `tests/unit/test_agent.py` — verified: `test_agent_tools_names_and_parameters` asserts the new A2 `source:`/`path:` parameter descriptions; all three listing-format assertions use the new format; "No document at S/ghost.md" refusal unchanged (A4).
- **Added** `test_read_step_nested_path_stays_intact` in `tests/unit/test_mock_tool_flow.py` — pins the actual bug: the `brain-of-reese-main` / `homelab/aws-route53.md` nested path (multiple `/`) parses intact; the old `rpartition` parse misread it.
**Gates (exact commands → outcomes)**
- `uv run pytest tests/unit/test_agent.py -v --no-cov` → 22 passed
- `uv run pytest tests/e2e/test_agent_document_tools.py -v --no-cov` → 4 passed (DB up)
- `uv run pytest tests/e2e/test_agent_document_tools.py tests/e2e/test_agent_unlimited_tools.py -v --no-cov` → 8 passed in isolation
- `uv run pytest --cov=app --cov-report=term-missing` → **1219 passed**, coverage TOTAL **99%** (>90%)
- `uv run ruff check tests/ && uv run pyright tests/` → clean; `uv run ruff check . && uv run pyright` → clean (0 errors)
**Decisions/deviations:** none — mock and unit work was already in the working tree from task 01's session (its report documents the pull-in); no commit made (one atomic commit lands at phase completion per AGENTS.md rule 8).
**Next pending task:** `63_unambiguous_document_listing/03_e2e_document_tools.md`
@@ -0,0 +1,71 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 47%]
........................................................................ [ 53%]
........................................................................ [ 59%]
........................................................................ [ 64%]
........................................................................ [ 70%]
........................................................................ [ 76%]
........................................................................ [ 82%]
........................................................................ [ 88%]
........................................................................ [ 94%]
................................................................... [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2469 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,16 @@
All gates green. Task 03 is verification-only (no code changes needed, consistent with its "Files changed: None"). Following the phase convention (one atomic commit at phase completion, per AGENTS.md rule 8), no commit is made here.
**Task 03 complete — E2E document tools validation**
- **Verified (no code changes):** SSE `tool` frames carry `argument` = `source/path`; UI renders "Listing documents"/"Reading …"; source chips `(source, path)` pairs; mock's deterministic answer content; query log `sources` = `"source/path, source/path"` — all asserted by the passing E2E suites against the new `source: X | path: Y | title: Z` catalog format.
- **Gates (DB up, all in isolation):**
- `uv run pytest tests/e2e/test_agent_document_tools.py -v --no-cov` → 4 passed
- `uv run pytest tests/e2e/test_agent_unlimited_tools.py -v --no-cov` → 4 passed
- `uv run pytest tests/e2e/test_whole_document_context.py -v --no-cov` → 3 passed
- `uv run pytest tests/e2e/test_chat_rag.py -v --no-cov` → 3 passed
- `uv run pytest --cov=app --cov-report=term-missing` → **1219 passed**, coverage TOTAL **99%** (>90%)
- `uv run ruff check . && uv run pyright` → clean (0 errors)
- **Deviations:** `test_chat_api.py` / `test_sse_events.py` named in the task never existed in this repo (verified via `git log --all`); ran `test_chat_rag.py` as the chat-API/SSE regression equivalent — same finding as task 01's report.
- **No defects found** in prior work; no commit (phase-level commit at completion).
**Next pending task:** `63_unambiguous_document_listing/04_docs.md`
@@ -0,0 +1,71 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 47%]
........................................................................ [ 53%]
........................................................................ [ 59%]
........................................................................ [ 64%]
........................................................................ [ 70%]
........................................................................ [ 76%]
........................................................................ [ 82%]
........................................................................ [ 88%]
........................................................................ [ 94%]
................................................................... [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2469 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,18 @@
All green. Phase 63 is now fully complete.
**Task 04 — documentation update**
- `README.md` — "Agent document tools" section now documents the `list_documents` output as `source: X | path: Y | title: Z` lines
- `.agent/user_stories/agent-document-tools.md` — acceptance criterion 3 updated to the labeled format (reflowed, meaning unchanged)
- Verified: `grep "source/path — title\|source/path - title"` over `README.md` + `.agent/user_stories/*.md` → no matches; `uv run ruff check README.md .agent/` → no error. Other `source/path` hits (SSE `argument`, source chips, `app/config.py` KB-overview note) are locked unchanged per A3 / are a different format
- Committed phase work (tasks 01–04) as `15a16a8 fix(agent): unambiguous document listing format for LLM parsing` (`--no-gpg-sign`, staged `app/ tests/ README.md`; `.agent/` tree left for the harness, matching phases 61/62)
**Test / lint / coverage results**
- `uv run pytest --cov=app --cov-report=term-missing` → exit 0, 1231 results, 0 failures; coverage TOTAL **99%** (>90% gate)
- `uv run ruff check .` → All checks passed; `uv run pyright` → 0 errors, 0 warnings
- E2E isolated (DB up): `test_agent_document_tools.py` 4 passed · `test_agent_unlimited_tools.py` 4 passed · `test_whole_document_context.py` 3 passed
- Regression isolated: `tests/integration/test_chat_api.py` 17 passed · `tests/unit/test_sse_events.py` 12 passed (the phase's `tests/e2e/` paths for these two don't exist — actual locations used)
**Deviations:** none — phase commit command's `app/ tests/` extended with `README.md` (task 04's deliverable; phase-62 precedent).
**Next pending task:** none — task 04 was the last task of phase 63; `todo/` is now empty aside from this phase's harness-managed files.
@@ -0,0 +1,71 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 47%]
........................................................................ [ 53%]
........................................................................ [ 59%]
........................................................................ [ 64%]
........................................................................ [ 70%]
........................................................................ [ 76%]
........................................................................ [ 82%]
........................................................................ [ 88%]
........................................................................ [ 94%]
................................................................... [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 173 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2469 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,15 @@
All green. Task complete.
**Report — phase 64, task 01 (importer progress hook)**
- `app/rag/importer.py`: `import_sources` gains optional kwarg `progress: Callable[[str, str, int, int], None] | None`; called once per importable file immediately before `_index_file` with `(source, rel_posix_path, done, total)` — `done` = 1-based index across all sources (`summary.files`), `total` = combined count from a pre-walk via the existing `iter_importable_files` (stats only, no file reads), done **only when `progress` is provided**; `limit` path unchanged (hook fires per processed file, `total` stays full); module docstring notes the hook (phase 64).
- `tests/unit/test_importer.py`: 4 new tests — exact multi-root sequence (`total` = combined), no-pre-walk sentinel (monkeypatched counting wrapper: 1 walk without hook vs 2 with), unchanged + `EmbeddingError` files still reported as current, and `limit=` (2 events, `total` = 3).
**Results**
- `uv run pytest --cov=app --cov-report=term`: **1223 passed**, `app/` coverage **99%** (>90% gate)
- `uv run ruff check . && uv run pyright`: clean (0 errors)
- Existing callers (`scripts/import_docs.py`, `app/api/sync.py`, `app/api/git_sources.py`) untouched and byte-identical in behavior — all pre-existing tests green.
**Notes:** `.agent/PLAN.md` no longer exists in the repo (removed in commit `281f355`); the phase files served as binding context — no deviations. No commit made (phase commit belongs to task 06).
**Next pending task:** `64_sync_upload_progress/02_sync_status_current_file.md`
@@ -0,0 +1,71 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 47%]
........................................................................ [ 52%]
........................................................................ [ 58%]
........................................................................ [ 64%]
........................................................................ [ 70%]
........................................................................ [ 76%]
........................................................................ [ 82%]
........................................................................ [ 88%]
........................................................................ [ 94%]
....................................................................... [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 89 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 180 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2476 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,17 @@
Everything is green and the diff is clean. Task complete.
## Report
**Implemented (task 02 — sync status reports the current file):**
- `app/api/sync.py`: `SyncStatus` gains `current_file`/`files_done`/`files_total`; `GET /api/sync/status` returns them (null/0/0 idle, all pre-existing keys unchanged); `_run_sync` resets them at start, passes the task-01 hook to `import_sources(..., prune=True, progress=_hook)` assigning `f"{source}/{rel}"` + counts, and clears `current_file` in both terminal states while keeping final counts; module + endpoint + dataclass docstrings updated (clone/pull phase reports no file per A4).
- `tests/unit/test_sync_button.py`: 3 new unit tests — full idle dict pinned (new keys null/0/0), mid-run status via the runner's real hook closure (worker-thread + gated clone/import, also pins A4 no-file-during-clone and success-terminal behavior), failed-terminal clears `current_file` keeping counts with sanitized error.
- `tests/integration/test_sync_api.py` (defect fix for prior work): `FakeImportSources`/`failing_import` now accept + record the `progress` kwarg, idle-shape pin extended with the three keys, success test pins the hook wiring.
**Results:**
- `uv run pytest` → 1226 passed
- `uv run pytest --cov=app --cov-report=term-missing` → 1226 passed, TOTAL 99% (`app/api/sync.py` 100%)
- `uv run ruff check . && uv run pyright` → clean (0 errors)
**Decisions:** unit tests drive `_run_sync` directly (no DB/HTTP; seams monkeypatched on `app.api.sync` — the house mock-import pattern), since the task named `test_sync_button.py` though the API coverage lives in the integration suite; in-memory `GitSource` needs explicit `kind="git"` (Python default applies at INSERT flush). No UI changes — "Syncing…" stays until task 04. No commit (phase commit belongs to task 06).
**Next pending task:** `.agent/phases/todo/64_sync_upload_progress/03_upload_background_202.md`
@@ -0,0 +1,72 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 41%]
........................................................................ [ 46%]
........................................................................ [ 52%]
........................................................................ [ 58%]
........................................................................ [ 64%]
........................................................................ [ 70%]
........................................................................ [ 76%]
........................................................................ [ 82%]
........................................................................ [ 88%]
........................................................................ [ 93%]
........................................................................ [ 99%]
.. [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 143 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 101 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 180 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 198 0 100%
-----------------------------------------------
TOTAL 2488 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,20 @@
All green. Final report:
## Task 03 complete — background upload (202 + status endpoint)
**Implemented**
- `app/schemas.py`: new `UploadAccepted` (`detail` + safe `name`); `UploadOut` kept — now the shape of the status `detail` on success.
- `app/api/git_sources.py`: `POST /api/git-sources/upload` → **202** the moment the archive is on disk (`db` dependency dropped; inline gates unchanged: name 422, flag 409 set *before* the streamed receive, cap 413 with temp deleted + flag released on the pre-task exception path); unpack → swap → row upsert (short-lived `SessionLocal`, `IntegrityError` → failed naming the path) → `check_models` → `import_sources(..., progress=_hook)` → gated overview → moved INFO log line → `success` with `UploadOut` fields, all in `_run_upload` (phase-32 `_run_sync` shape; failures land sanitized in `failed`; `finally` cleans temps + clears the flag; `CancelledError` not caught). New `UploadStatus` dataclass + `GET /api/git-sources/upload/status` (identical key set to `/api/sync/status`, admin-only).
- `tests/integration/test_git_sources_upload.py`: all 29 scenarios kept, observation point moved to the status endpoint (polled to terminal) — every background branch has a dedicated test (unpack/zero-entry/swap/IntegrityError/model-down/import-fail/success/cancel-cleanup), mid-run `current_file`/counts via the task-02 hook seam, flag-not-state 409 pins, temp-on-disk + 202-before-scan pins, TRUNCATE regression.
**Results**
- `uv run pytest --cov=app --cov-report=term` → **1233 passed**, app/ **99%** (`git_sources.py` 100%)
- `uv run ruff check .` → clean; `uv run pyright` → 0 errors, 0 warnings
- `bash .agent/validate.sh` → validation OK; upload suite alone: 29 passed in ~1 s
**Notable decisions**
- The task's "adapt `tests/unit/test_archive_upload.py`" bullet misreferences the file: that suite covers the unchanged `archive_upload` *utility*; the 202-contract HTTP scenarios live in `tests/integration/test_git_sources_upload.py` (adapted there; unit file untouched, still green).
- Discovered: starlette's TestClient delivers the response only after the app's task-completion callback runs on the loop — a sync park inside `unpack_archive` stalls even the 202. So the temp-on-disk pin drives `_run_upload` directly (worker loop), and the HTTP "202 while in flight" pin uses the async import gate.
- `test_archive_upload_sources.py` E2E expected to fail until task 06 (noted, not fixed here).
**Next pending task:** `04_sync_button_live_file.md`
@@ -0,0 +1,72 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 29%]
........................................................................ [ 35%]
........................................................................ [ 40%]
........................................................................ [ 46%]
........................................................................ [ 52%]
........................................................................ [ 58%]
........................................................................ [ 64%]
........................................................................ [ 70%]
........................................................................ [ 75%]
........................................................................ [ 81%]
........................................................................ [ 87%]
........................................................................ [ 93%]
........................................................................ [ 99%]
......... [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 181 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 101 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 180 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 201 0 100%
-----------------------------------------------
TOTAL 2529 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,14 @@
Task 04 complete. All changes are confined to `frontend/` + the two test files (the `app/`/integration diffs were pre-existing uncommitted work from tasks 01–03, untouched by me).
**Implemented**
- `frontend/assets/sources.js`: `fmtSyncLabel(kind, currentFile, done, total)` (sync → "Syncing…", upload → "Importing", file appended only when present, counts only when `total > 0`); `enterSyncRunningState(kind, file, done, total)` writes the full untruncated path to button `title` (removed when null) + `#sync-result` aria-live; unified tick fetches both `/api/sync/status` and `/api/git-sources/upload/status` (upload 403 = "no upload", blips retry) with the 7-branch decision tree (sync running → upload running → sync success → sync failed → upload success → upload failed → idle); upload success settles + `loadDocs()` with no counts in `#sync-result` (A3); 202/409 click branch → `enterSyncRunningState("sync", null, 0, 0)`; `initSyncButton` re-attaches a running upload when sync is idle; header comment documents the contract
- `frontend/assets/styles.css`: `.sync-label` ellipsis (inline-block, `min(16rem, 40vw)`, ellipsis, nowrap)
- `frontend/sources.html`: comment block updated (no structural change)
- New `tests/unit/test_frontend_sync_upload.py` (9 pins); adapted 2 now-stale pins in `tests/unit/test_sync_button.py`
**Results**
- `uv run pytest --cov=app --cov-report=term` → 1242 passed, `app/` 99% (>90% gate)
- `uv run ruff check . && uv run pyright` → clean (0 errors)
- E2E regressions in isolation: `test_sync_button.py` 3✓, `test_sync_model_down.py` 4✓, `test_git_sources_admin.py` 6✓, `test_local_directory_sources.py` 3✓; `node --check` + runtime `fmtSyncLabel` checks pass
**Notes**: no deviations from the task spec; no commit (task 06 owns it). Next pending task: `.agent/phases/todo/64_sync_upload_progress/05_upload_toast_progress.md`.
@@ -0,0 +1,72 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 28%]
........................................................................ [ 34%]
........................................................................ [ 40%]
........................................................................ [ 46%]
........................................................................ [ 52%]
........................................................................ [ 57%]
........................................................................ [ 63%]
........................................................................ [ 69%]
........................................................................ [ 75%]
........................................................................ [ 81%]
........................................................................ [ 86%]
........................................................................ [ 92%]
........................................................................ [ 98%]
.................. [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 181 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 101 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 180 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 201 0 100%
-----------------------------------------------
TOTAL 2529 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
@@ -0,0 +1,19 @@
Everything is verified. All deletions in `git-sources.js` are confined to the phase-49 upload doc/paragraph (marked superseded) and the synchronous submit handler; load/add/remove behavior is untouched.
## Report — Task 05 complete
**Implemented** (`frontend/assets/git-sources.js` + `frontend/git-sources.html`):
- `showUploadToast` — page-local phase-55 toast: single lazy node, `role="status" aria-live="polite"`, ~5 s auto-dismiss, new toast replaces pending one; `.toast` CSS reused as-is
- Submit rework: 202 → toast `Successfully uploaded — <name>` (UploadAccepted body, file-name fallback) → clear input → processing state → poll; 409 → re-attach, NO error banner; other non-2xx/network keep phase-49 banners + kept selection; `finally` restores only when no poll is active (§7.4)
- `startUploadPolling` — 2 s single-timer poll of `GET /api/git-sources/upload/status`: running → live `"Processing… <file> (n/m)"` + full-path `title`; success → result line + announce + `loadSources()` (no second toast); failed → sanitized error banner + `loadSources()`; idle → defensive restore
- `initUploadStatus` boot re-attach (admin branch): running → processing + poll; success → result line only; failed → banner; idle → nothing; header/form comments rewritten (phase-49 paragraph superseded)
- `tests/unit/test_frontend_sync_upload.py` extended with 10 source pins (all task-04 pins intact)
**Results:**
- `uv run pytest --cov=app --cov-report=term-missing` → 1251 passed, coverage **99%** (>90 ✓)
- `uv run ruff check . && uv run pyright` → clean (0 errors)
- Ad-hoc Playwright sanity (temp files, deleted): toast-on-202 + auto-dismiss + single node, Processing→settle, reload re-render, 409 re-attach without banner, mid-scan reload (160 files) re-attaches to `Processing…` and settles — zero uncaught JS errors
**Notes:** `tests/e2e/test_archive_upload_sources.py` still expects the old 200 flow — expected-fail until task 06 (noted in task 03); no commit (phase commit lands with task 06).
**Next pending task:** `06_e2e_sync_upload_progress.md`
@@ -0,0 +1,72 @@
........................................................................ [ 5%]
........................................................................ [ 11%]
........................................................................ [ 17%]
........................................................................ [ 23%]
........................................................................ [ 28%]
........................................................................ [ 34%]
........................................................................ [ 40%]
........................................................................ [ 46%]
........................................................................ [ 51%]
........................................................................ [ 57%]
........................................................................ [ 63%]
........................................................................ [ 69%]
........................................................................ [ 74%]
........................................................................ [ 80%]
........................................................................ [ 86%]
........................................................................ [ 92%]
........................................................................ [ 97%]
........................... [100%]
=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
-----------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 22 0 100%
app/api/chat.py 131 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 93 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 181 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 8 0 100%
app/api/sync.py 101 0 100%
app/config.py 112 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 20 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/logging.py 13 0 100%
app/db.py 21 0 100%
app/main.py 52 0 100%
app/models.py 86 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 78 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 180 3 98%
app/rag/llm.py 189 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 65 0 100%
app/rag/retriever.py 94 3 97%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 201 0 100%
-----------------------------------------------
TOTAL 2529 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
+2 -1
View File
@@ -35,7 +35,8 @@ addition to "thinking".
3. `app/rag/agent.py`: the loop — budgets from
`BOR_AGENT_LIST_CALLS` / `BOR_AGENT_READ_CALLS` (default 1/1); the
`list_documents` tool returns the DB catalog
(`source/path — title` lines, `/api/docs` order); `read_document`
(`source: X | path: Y | title: Z` lines, `/api/docs` order);
`read_document`
appends the **full** document text (A7-revised: never truncated); after
both budgets are spent the tools are dropped and the model must answer;
safety cap on model rounds; the deflection (LOW) path is byte-identical.