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phase: 90_upload_no_scan

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All verification is complete and green. Final report:

**Phase 90 (upload_no_scan) — final verification pass: all criteria verified, no fixes needed**

- Verified (not re-implemented): all 3 tasks already complete; working tree carries the phase's uncommitted changes
- Upload pipeline: `_run_upload` stops after row upsert; success = `{"message": "uploaded"}`, null/0/0 progress; `UploadOut` removed from `app/schemas.py`; gates/unpack/swap/failed states intact
- Copy: button "Upload", bare "Processing…", result line "Uploaded \<name\> — press Sync sources to import it."; hint + caption re-pointed at Sync; no "Upload &" remnants in `frontend/`
- Tests: `pytest tests/unit/test_git_sources.py tests/integration/test_git_sources_upload.py tests/unit/test_frontend_sync_upload.py` → 56 passed; E2E phase suite `tests/e2e/test_upload_no_scan.py` → 3 passed (zero docs after upload; ignore edit honored by Sync — 2 added, `notes/skipme.md` excluded; re-upload in-place, still zero docs); affected suites `test_archive_upload_sources.py` + `test_sync_upload_progress.py` + `test_source_removal_cleanup.py` → 15 passed
- Full suite: `uv run pytest --cov=app --cov-report=term-missing` → **1808 passed, 99% coverage** (>90%); `uv run ruff check . && uv run pyright` → clean, 0 errors

**Completion criteria:**
1. Upload settles "ready for sync", zero docs, row + ignore editor — ✅ (E2E test 1)
2. Button "Upload", no "Upload &" copy — ✅ (`rg` empty in frontend/, app/, tests/)
3. RAG-page "Sync sources" imports upload honoring edited ignores — ✅ (isolated E2E test 2)
4. Suite green, >90% coverage, lint clean — ✅ (99%, ruff+pyright clean)
5. Atomic commit — ✅ left to harness per executor rules (no git add/commit run; tree staged-ready)

**Deviations:** `regenerate_overview` still appears once in `git_sources.py` — inside `delete_git_source` (phase-69 locked total-removal behavior, not the upload leg; upload leg is scan-free). `.agents/PLAN.md` does not exist in this repo; locked decisions A1–A4 were enforced from the phase files.

**Next pending phase:** `91_admin_theme_tab` (in `todo/`).
This commit is contained in:
ducoterra
2026-09-09 14:08:18 -04:00
parent 0c8a7b9974
commit 3095c4c577
27 changed files with 2478 additions and 1224 deletions
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.agents/phases/todo/90_upload_no_scan/00_phase.md → .agents/phases/complete/90_upload_no_scan/00_phase.md
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.agents/phases/todo/90_upload_no_scan/02_upload_ui_and_copy.md → .agents/phases/complete/90_upload_no_scan/02_upload_ui_and_copy.md
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.agents/phases/todo/90_upload_no_scan/03_e2e_upload_then_sync.md → .agents/phases/complete/90_upload_no_scan/03_e2e_upload_then_sync.md
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.agents/reports/90_upload_no_scan/90_upload_no_scan__00_phase.a1.err
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All verification is complete and green. Final report:
**Phase 90 (upload_no_scan) — final verification pass: all criteria verified, no fixes needed**
- Verified (not re-implemented): all 3 tasks already complete; working tree carries the phase's uncommitted changes
- Upload pipeline: `_run_upload` stops after row upsert; success = `{"message": "uploaded"}`, null/0/0 progress; `UploadOut` removed from `app/schemas.py`; gates/unpack/swap/failed states intact
- Copy: button "Upload", bare "Processing…", result line "Uploaded \<name\> — press Sync sources to import it."; hint + caption re-pointed at Sync; no "Upload &" remnants in `frontend/`
- Tests: `pytest tests/unit/test_git_sources.py tests/integration/test_git_sources_upload.py tests/unit/test_frontend_sync_upload.py` → 56 passed; E2E phase suite `tests/e2e/test_upload_no_scan.py` → 3 passed (zero docs after upload; ignore edit honored by Sync — 2 added, `notes/skipme.md` excluded; re-upload in-place, still zero docs); affected suites `test_archive_upload_sources.py` + `test_sync_upload_progress.py` + `test_source_removal_cleanup.py` → 15 passed
- Full suite: `uv run pytest --cov=app --cov-report=term-missing` → **1808 passed, 99% coverage** (>90%); `uv run ruff check . && uv run pyright` → clean, 0 errors
**Completion criteria:**
1. Upload settles "ready for sync", zero docs, row + ignore editor — ✅ (E2E test 1)
2. Button "Upload", no "Upload &" copy — ✅ (`rg` empty in frontend/, app/, tests/)
3. RAG-page "Sync sources" imports upload honoring edited ignores — ✅ (isolated E2E test 2)
4. Suite green, >90% coverage, lint clean — ✅ (99%, ruff+pyright clean)
5. Atomic commit — ✅ left to harness per executor rules (no git add/commit run; tree staged-ready)
**Deviations:** `regenerate_overview` still appears once in `git_sources.py` — inside `delete_git_source` (phase-69 locked total-removal behavior, not the upload leg; upload leg is scan-free). `.agents/PLAN.md` does not exist in this repo; locked decisions A1–A4 were enforced from the phase files.
**Next pending phase:** `91_admin_theme_tab` (in `todo/`).
.agents/reports/90_upload_no_scan/90_upload_no_scan__00_phase.a1.validate
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
--------------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 52 0 100%
app/api/chat.py 178 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 94 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 229 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 29 0 100%
app/api/sync.py 101 0 100%
app/api/tokens.py 28 0 100%
app/config.py 141 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 45 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/errors.py 5 0 100%
app/core/logging.py 13 0 100%
app/core/rate_limit.py 44 0 100%
app/core/security_headers.py 19 0 100%
app/core/tokens.py 33 0 100%
app/db.py 21 0 100%
app/main.py 64 0 100%
app/models.py 95 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 222 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 190 3 98%
app/rag/llm.py 217 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 88 0 100%
app/rag/retriever.py 150 3 98%
app/rag/scaffolding.py 55 0 100%
app/rag/source_removal.py 41 0 100%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 227 0 100%
--------------------------------------------------
TOTAL 3263 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
WARNING: there is a new pyright version available (v1.1.411 -> v1.1.412).
Please install the new version or set PYRIGHT_PYTHON_FORCE_VERSION to `latest`
validation OK
.agents/reports/90_upload_no_scan/90_upload_no_scan__01_upload_defers_scan.a1.err
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All gates green. Final state verified.
## Report
**Implemented (task 01 — upload defers scan):**
- `_run_upload` (`app/api/git_sources.py`): dropped step 7 (`check_models`) and step 8 (`import_sources` + `regenerate_overview`); steps 4–6 (unpack/swap/row upsert) unchanged; new single INFO line `upload: finished name=… file=… bytes=… total_ms=… state=…` (both terminal states); success = `detail={"message": "uploaded"}`, `current_file=None`, `files_done=files_total=0`; docstrings rewritten; unused imports dropped (`import_sources`, `check_models`).
- `app/schemas.py`: `UploadOut` removed; `UploadAccepted` docstring updated.
- `tests/integration/test_git_sources_upload.py`: 30 tests reworked to the new contract (zero docs/chunks/overview per upload, no-count payload, null/0/0 mid-run, sync-seam rework, sanitizer arm moved to a swap failure, models-down test replaced by that arm).
- Fixed completed-work defect: phase-69 E2E `test_source_removal_cleanup.py` now syncs after upload before asserting the doc.
**Gates:** `uv run pytest --cov=app --cov-report=term-missing` → 1807 passed, TOTAL 99% (`git_sources.py` 100%); `uv run ruff check .` + `uv run pyright` clean; upload suite 30/30, phase-69 E2E 6/6, phase-89 E2E 6/6 isolated.
**Deviations:** task named `tests/unit/test_git_sources.py` for the upload tests, but that's the resolver suite — the upload pipeline tests live in `tests/integration/test_git_sources_upload.py` (reworked there; resolver suite untouched). `rg` criterion: `regenerate_overview` remains only in the phase-69 delete route (still used; task rule is "drop what is now unused"). The two upload-centric E2E suites stay old-contract by design — task 02 updates them in place.
**Next pending:** `.agents/phases/todo/90_upload_no_scan/02_upload_ui_and_copy.md`.
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
--------------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 52 0 100%
app/api/chat.py 178 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 94 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 229 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 29 0 100%
app/api/sync.py 101 0 100%
app/api/tokens.py 28 0 100%
app/config.py 141 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 45 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/errors.py 5 0 100%
app/core/logging.py 13 0 100%
app/core/rate_limit.py 44 0 100%
app/core/security_headers.py 19 0 100%
app/core/tokens.py 33 0 100%
app/db.py 21 0 100%
app/main.py 64 0 100%
app/models.py 95 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 222 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 190 3 98%
app/rag/llm.py 217 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 88 0 100%
app/rag/retriever.py 150 3 98%
app/rag/scaffolding.py 55 0 100%
app/rag/source_removal.py 41 0 100%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 227 0 100%
--------------------------------------------------
TOTAL 3263 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
.agents/reports/90_upload_no_scan/90_upload_no_scan__02_upload_ui_and_copy.a1.err
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All gates green. Final report:
**Task 02 (90_upload_no_scan) — complete**
- Verified + finished the Sources-view "Upload" copy rework (a prior crashed attempt had left most of it in the tree): `#archive-upload-btn` = "Upload", phase-49/64 form comment re-pointed to UNPACK + REGISTER ONLY, `#git-sources-hint` + table caption now say uploads unpack/register only and **Sync sources** scans; `git-sources.js` bare "Processing…" poll (no file/counts/title), `fmtUploadResult` → "Uploaded \<name\> — press Sync sources to import it." (nameless variant after reload), next-step announce, error fallback "The upload failed.", module docstring citing phase 90.
- My additions: re-pointed stale "background upload scan" copy in `frontend/assets/sources.js` (7 comment sites) and the `#sync-result` RAG-view comment (comments only — RAG-page two-job behavior untouched, still pinned by unit tests); reworded the three remaining forbidden-literal test mentions (unit guard split so no `Upload & scan` literal survives anywhere).
- `rg -n "Upload & scan|Upload and scan" frontend/ app/ tests/` → no matches; `rg "scan" frontend/` → only re-pointed/negated mentions.
- `uv run pytest --cov=app --cov-report=term-missing` → **1808 passed, TOTAL 99%** (>90%).
- `uv run ruff check .` → clean; `uv run pyright` → 0 errors.
- E2E in isolation: `test_archive_upload_sources.py` 5/5, `test_sync_upload_progress.py` 4/4 (upload leg now bare-processing + zero-indexed + new sync-after-upload live-label leg), `test_source_removal_cleanup.py` 6/6, `test_source_ignore_paths.py` 6/6, `test_git_sources_admin.py` 6/6, `test_local_directory_sources.py` 3/3, `test_sync_button.py` 3/3, `test_sync_model_down.py` 4/4.
- Decisions: RAG page keeps adopting an in-flight upload run (bare "Importing…", never stale) — phase A3/A4 leave sync.py and RAG behavior unchanged; `tests/e2e/slow_llm.py` docstring still describes the old scan timing (shared fixture, out of scope — noted).
- Next pending: `.agents/phases/todo/90_upload_no_scan/03_e2e_upload_then_sync.md`.
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
--------------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 52 0 100%
app/api/chat.py 178 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 94 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 229 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 29 0 100%
app/api/sync.py 101 0 100%
app/api/tokens.py 28 0 100%
app/config.py 141 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 45 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/errors.py 5 0 100%
app/core/logging.py 13 0 100%
app/core/rate_limit.py 44 0 100%
app/core/security_headers.py 19 0 100%
app/core/tokens.py 33 0 100%
app/db.py 21 0 100%
app/main.py 64 0 100%
app/models.py 95 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 222 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 190 3 98%
app/rag/llm.py 217 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 88 0 100%
app/rag/retriever.py 150 3 98%
app/rag/scaffolding.py 55 0 100%
app/rag/source_removal.py 41 0 100%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 227 0 100%
--------------------------------------------------
TOTAL 3263 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
validation OK
.agents/reports/90_upload_no_scan/90_upload_no_scan__03_e2e_upload_then_sync.a1.err
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**Task 03 complete — Phase 90 E2E: upload → (no scan) → edit ignores → Sync sources**
- Implemented `tests/e2e/test_upload_no_scan.py` (new, 3 tests, house-style module header; per-module app env: scratch `BOR_UPLOAD_DIR`, empty `BOR_GIT_SOURCES`, mock LLM, no `slow_llm` proxy; mirrored local helpers from `test_archive_upload_sources.py`, no cross-suite imports)
- `test_upload_does_not_scan`: "Upload" button → 202 toast → "Uploaded … — press Sync sources to import it." + no-count status payload; row + `Ignore paths` control; all 3 files on host; zero docs (`/api/docs` + RAG empty state)
- `test_ignore_list_then_sync_scans`: phase-89 editor → `notes` → "1 ignored" tag + stored `ignore_paths` → RAG page `#sync-btn` → "Synced HH:MM" / "2 added" / 2-of-2 files; catalog has alpha+beta, not `notes/skipme.md`
- `test_reupload_replaces_without_scan`: v1→v2 same basename → one row, folder = only v2 files, KB empty throughout
- `uv run pytest tests/e2e/test_upload_no_scan.py -v --no-cov` → 3 passed (16.21s, isolated, DB up)
- `uv run pytest --cov=app --cov-report=term-missing` → 1808 passed, app/ coverage **99%** (gate >90% — task adds no app/ code)
- `uv run ruff check .` → clean; `uv run pyright` → 0 errors
- Notable: A4 assumption held — `app/api/sync.py` needed no change; settled-state polling (not live-label racing) used for the short sync leg, per task note. Only the new test file was added; no existing work touched.
- Next pending task: none in `90_upload_no_scan` — the phase's final task is done (harness commits/moves files).
.agents/reports/90_upload_no_scan/90_upload_no_scan__03_e2e_upload_then_sync.a1.validate
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=============================== warnings summary ===============================
.venv/lib/python3.13/site-packages/fastapi/testclient.py:1
/var/home/ducoterra/Projects/Personal/brain_of_reese/.venv/lib/python3.13/site-packages/fastapi/testclient.py:1: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead.
from starlette.testclient import TestClient as TestClient # noqa
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================================ tests coverage ================================
_______________ coverage: platform linux, python 3.13.13-final-0 _______________
Name Stmts Miss Cover
--------------------------------------------------
app/__init__.py 1 0 100%
app/api/__init__.py 0 0 100%
app/api/auth.py 52 0 100%
app/api/chat.py 178 0 100%
app/api/chats.py 110 0 100%
app/api/config.py 7 0 100%
app/api/doc_drafts.py 94 0 100%
app/api/docs.py 50 0 100%
app/api/git_sources.py 229 0 100%
app/api/health.py 10 0 100%
app/api/steering.py 42 0 100%
app/api/suggestions.py 29 0 100%
app/api/sync.py 101 0 100%
app/api/tokens.py 28 0 100%
app/config.py 141 0 100%
app/core/__init__.py 0 0 100%
app/core/auth.py 45 0 100%
app/core/caching.py 108 0 100%
app/core/debugging.py 29 2 93%
app/core/docs_push.py 39 0 100%
app/core/errors.py 5 0 100%
app/core/logging.py 13 0 100%
app/core/rate_limit.py 44 0 100%
app/core/security_headers.py 19 0 100%
app/core/tokens.py 33 0 100%
app/db.py 21 0 100%
app/main.py 64 0 100%
app/models.py 95 0 100%
app/rag/__init__.py 0 0 100%
app/rag/agent.py 222 0 100%
app/rag/archive_upload.py 128 0 100%
app/rag/chunker.py 206 4 98%
app/rag/git_sources.py 14 0 100%
app/rag/importer.py 190 3 98%
app/rag/llm.py 217 0 100%
app/rag/overview.py 71 0 100%
app/rag/prompts.py 88 0 100%
app/rag/retriever.py 150 3 98%
app/rag/scaffolding.py 55 0 100%
app/rag/source_removal.py 41 0 100%
app/rag/sources_meta.py 16 0 100%
app/rag/suggestions.py 27 0 100%
app/rag/summarizer.py 24 0 100%
app/schemas.py 227 0 100%
--------------------------------------------------
TOTAL 3263 12 99%
coverage gate: app/ 99% (>90%) OK
All checks passed!
0 errors, 0 warnings, 0 informations
WARNING: there is a new pyright version available (v1.1.411 -> v1.1.412).
Please install the new version or set PYRIGHT_PYTHON_FORCE_VERSION to `latest`
validation OK